New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2131135 =	45 (1.040)	4 (0.100)	4/242	NT	8.3%	coding (1107/2496 nt)	fimD	type I pili subunit FimD
	?	NC_002947	2131175 =	45 (1.090)					coding (1067/2496 nt)	fimD	type I pili subunit FimD

CCAGGTCCTTGCTAAACCCCAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAGGTCGTCGAT  >  NC_002947/2130990‑2131284                                                                                                                                                  |                                                                                                                                                      tcttctctacgtacgtccgcgccggcccctacgccatcgactacctgagtaccgcaggcagcggcgagctggaagtcgtcgtgaccgaggccgatggccaggtccgccgcttcatccagccgtactcgaccatgagcaatctgctGCGcc                                                                                                                                                   >  2:456013‑M1/146‑150 (MQ=255)       ccTTGCTAAACCCCAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCNGAGCAGNGGGGTCTCGAGGNCGCTGGAGGGGTTGTAGCGCCCGANCg                                                                                                                                             <  1:1086854/150‑1 (MQ=255)             tAAACCCCAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCAc                                                                                                                                       >  1:702451/1‑150 (MQ=255)             tAAACCCCAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCAc                                                                                                                                       >  2:46818/1‑150 (MQ=255)                 ccccAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTa                                                                                                                                   >  2:986944/1‑150 (MQ=255)                  cccAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTaa                                                                                                                                  >  1:657838/1‑150 (MQ=255)                   ccAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGcc                                                                                                                                                   <  1:27921/132‑1 (MQ=255)                   ccAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGcc                                                                                                                                                   >  2:27921/1‑132 (MQ=255)                   ccAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAAc                                                                                                                                 >  2:610248/1‑150 (MQ=255)                   ccAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAAc                                                                                                                                 <  1:142815/150‑1 (MQ=255)                       gTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCa                                                                                                                             >  2:802629/1‑150 (MQ=255)                       gTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCa                                                                                                                             >  2:21822/1‑150 (MQ=255)                                      gAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCgcag                                                                                                              >  1:833958/1‑150 (MQ=255)                                        aTTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCgcagca                                                                                                            <  1:986944/150‑1 (MQ=255)                                                  cATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGTAGCCTACGGCCAGCGTTCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCAt                                                                                                  <  1:284134/150‑1 (MQ=255)                                                   ctccaGCCGCCGTAAACCGGGGTGGTCCAGTAGGAGGCTACGGCCAGCGTGCCTTGCCAGGGCAGCGGGGTCGCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGACACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATg                                                                                                 <  2:316633/146‑1 (MQ=255)                                                         ccgccgCACACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAg                                                                                           <  1:889479/150‑1 (MQ=255)                                                           gccgTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAgcgc                                                                                                                                                    <  1:1131425/91‑1 (MQ=255)                                                           gccgTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAgcgc                                                                                                                                                    >  2:1131425/1‑91 (MQ=255)                                                                  aCCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTTCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTgg                                                                                  >  1:1031416/1‑150 (MQ=255)                                                                        gtgtCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAg                                                                            <  2:876380/150‑1 (MQ=255)                                                                        gtgtCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAg                                                                            >  2:677530/1‑150 (MQ=255)                                                                          gtCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAgcg                                                                          >  2:990617/1‑150 (MQ=255)                                                                           gtcgtcgtgaccgaggccgatggccaggtccgccgcttcatccagccgtactcgaccatgagcaatctgctGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGgc                                                                                                                  <  1:230968‑M1/38‑1 (MQ=255)                                                                           gtcgtcgtgaccgaggccgatggccaggtccgccgcttcatccagccgtactcgaccatgagcaatctgctGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGgc                                                                                                                  >  2:230968‑M1/72‑109 (MQ=255)                                                                            cccAGTAGGTGCCTACGGCCAGCGGGCCTTGCCAGGGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAgcggc                                                                        <  2:749567/150‑1 (MQ=255)                                                                             ccAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGGTGAAgcggcg                                                                       >  1:598316/1‑150 (MQ=255)                                                                             ccAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAgcggcg                                                                       <  2:833958/150‑1 (MQ=255)                                                                             ccAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAgcggcg                                                                       <  2:190749/150‑1 (MQ=255)                                                                               tcgtgaccgaggccgatggccaggtccgccgcttcatccagccgtactcgaccatgagcaatctgctGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATgg                                                                                                >  2:1049443‑M1/68‑123 (MQ=255)                                                                               tcgtgaccgaggccgatggccaggtccgccgcttcatccagccgtactcgaccatgagcaatctgctGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATgg                                                                                                <  1:1049443‑M1/56‑1 (MQ=255)                                                                                   ggggCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTg                                                                 <  2:132418/147‑1 (MQ=255)                                                                                         tACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATc                                                           >  2:394850/1‑150 (MQ=255)                                                                                          aCGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCg                                                          <  1:610248/150‑1 (MQ=255)                                                                                               cAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTc                                                     >  2:558118/1‑150 (MQ=255)                                                                                                aGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCg                                                    <  2:941010/150‑1 (MQ=255)                                                                                                    tGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCa                                                >  2:865142/1‑150 (MQ=255)                                                                                                       cTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCacga                                             >  2:174269/1‑150 (MQ=255)                                                                                                        ttGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCacgac                                            >  1:289116/1‑150 (MQ=255)                                                                                                                gcagcGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCa                                    <  2:711444/150‑1 (MQ=255)                                                                                                                      gggTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTcgc                              <  1:677530/150‑1 (MQ=255)                                                                                                                         tctcGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCg                                                          <  1:200173/119‑1 (MQ=255)                                                                                                                         tctcGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCg                                                          >  2:200173/1‑119 (MQ=255)                                                                                                                         tctcGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTcgccgc                           >  2:539782/1‑150 (MQ=255)                                                                                                                           tcGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTGACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTgg                                                                <  1:1069625/111‑1 (MQ=255)                                                                                                                           tcGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTGACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTgg                                                                >  2:1069625/1‑111 (MQ=255)                                                                                                                           tcGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGctg                         >  2:505163/1‑150 (MQ=255)                                                                                                                           tcGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGctg                         >  2:49354/1‑150 (MQ=255)                                                                                                                             gAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGctgcc                       >  1:1032060/1‑150 (MQ=255)                                                                                                                                     tGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTAc               >  1:392171/1‑150 (MQ=255)                                                                                                                                       gAGGGGTTGTAGCGCCCGACAGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTc             >  1:562026/1‑150 (MQ=255)                                                                                                                                         ggggTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAg           <  1:990617/150‑1 (MQ=255)                                                                                                                                            gTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCacgac                                            <  2:496405/114‑1 (MQ=255)                                                                                                                                            gTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCacgac                                            >  1:496405/1‑114 (MQ=255)                                                                                                                                                 aGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAGGTCGTCGa   <  1:1014214/150‑1 (MQ=255)                                                                                                                                                 aGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCAAGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCCGGtcgtcgc   >  2:903736/1‑149 (MQ=255)                                                                                                                                                  GCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAGGTCGTCGAt  <  2:1125326‑M1/150‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                      CCAGGTCCTTGCTAAACCCCAGGTTGCCCGCGCGGTAGAATTCGCTGGCCATCAAGCCGCCGTAAACCGTGGTGTCCCAGTAGGAGCCTACGGCCAGCGTGCCTTGCCAGAGCAGCGGGGTCTCGAGGTCGCTGGAGGGGTTGTAGCGCCCGACCGTGGCACTGTAACGCCATACGCCTGGGCGCAGCAGATTGCTCATGGTCGAGTACGGCTGGATGAAGCGGCGGACCTGGCCATCGGCCTCGGTCACGACGACTTCCAGCTCGCCGCTGCCTGCGGTACTCAGGTCGTCGAT  >  NC_002947/2130990‑2131284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.