New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2136209 =	30 (0.690)	6 (0.150)	6/242	NT	18.3%	coding (585/2448 nt)	fadE	medium‑long chain acyl‑CoA dehydrogenase
	?	NC_002947	2136231 =	25 (0.610)					coding (563/2448 nt)	fadE	medium‑long chain acyl‑CoA dehydrogenase

GGACCTGCCGCCCGAAGCCTGGGCACATATCAAGCAACATGGCTTTTTCGCCCTGATCATCCCCAAGGAATACGGCGGCAAGGGCTTCTCCGCCTACGCCCACTCCCAGGTGGCGATGAAGC‑TGGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2136338‑2136209 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaccTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGGCGC  >  NC_002947/2136231‑2136375                                                                                                                                                                                                                                                                                      GGACCTGCCGCCCGAAGCCTGGGCACATATCAAGCAACATGGCTTTTTCGCCCTGATCATCCCCAAGGAATACGGCGGCAAGGGCTTCTCCGCCTACGCCCACTCCCAGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGA                                                                                                                               <  1:419813/150‑1                                                                                     CTTCTCCGCCTACGCCCACTCCCAGGTGGCGATGAAGC‑TGGCCACCTGGTAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTAT                                                                                                            >  1:510798/1‑85                                                                                     CTTCTCCGCCTACGCCCACTCCCAGGTGGCGATGAAGC‑TGGCCACCTGGTAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTAT                                                                                                            <  2:510798/85‑1                                                                                                  GCCCACTCCCAGGTGGCGATGAAGC‑TGGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGG                              <  2:419813/150‑1                                                                                                           CAGGTGGCGATGAAGC‑TGGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAA                                                                                  <  1:419960/89‑1                                                                                                           CAGGTGGCGATGAAGC‑TGGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAA                                                                                  >  2:419960/1‑89                                                                                                                               CCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGCCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGGCGC  >  2:67576/1‑150                                                                                                                                   CTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGC                                                             <  1:720259/87‑1                                                                                                                                   CTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGC                                                             >  2:720259/1‑87                                                                                                                                                                                                                                                                                      GGACCTGCCGCCCGAAGCCTGGGCACATATCAAGCAACATGGCTTTTTCGCCCTGATCATCCCCAAGGAATACGGCGGCAAGGGCTTCTCCGCCTACGCCCACTCCCAGGTGGCGATGAAGC‑TGGCCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2136338‑2136209 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccaccTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGGCGC  >  NC_002947/2136231‑2136375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.