New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2136209 =	30 (0.690)	6 (0.150)	6/242	NT	18.3%	coding (585/2448 nt)	fadE	medium‑long chain acyl‑CoA dehydrogenase
	?	NC_002947	2136231 =	25 (0.610)					coding (563/2448 nt)	fadE	medium‑long chain acyl‑CoA dehydrogenase

TTCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGGCGC  >  NC_002947/2136083‑2136375                                                                                                                                                      |                                                                                                                                                 ttCCTCGCCACGGGCCAGGCGCGGCCGTTCGATGTTGCGTTGTTCGTCGGTGCCGTAGTGGGAAAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTg                                                                                                                                                 >  1:308687/1‑150 (MQ=255) ttCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTg                                                                                                                                                 >  1:871329/1‑150 (MQ=255)  tCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTgg                                                                                                                                                <  1:330531/150‑1 (MQ=255)    cTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGa                                                                                                                                              <  2:892986/150‑1 (MQ=255)     tCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAg                                                                                                                                             >  2:252689/1‑150 (MQ=255)     tCGCCACGGGCCAGGCACGACAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAg                                                                                                                                             >  2:12981/1‑150 (MQ=255)         cACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTggg                                                                                                                                         <  1:989421/150‑1 (MQ=255)          ccaggatctggacctgccgcccgaagcctgggcacatatcaagcaacatggctttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGc                                                                                                                                        <  2:419813‑M1/33‑1 (MQ=255)              gCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCGGCAGTTCGGCAGGGCTCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGTGTGGGCGTAg                                                                                                                                    >  1:387795/1‑150 (MQ=255)                cAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGc                                                                                                                                  >  2:982186/1‑150 (MQ=255)                    ggacctgccgcccgaagcctgggcacatatcaagcaacatggctttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaggtggccagcttcatcgccaccTGGGAGTGGGCGTAGGCGga                                                                                                                               <  1:419813‑M2/20‑1 (MQ=255)                            gTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCtt                                                                                                                      <  2:353740/150‑1 (MQ=255)                             tAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGAAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTg                                                                                                                     <  2:362980/150‑1 (MQ=255)                              aGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTgc                                                                                                                    <  2:787751/150‑1 (MQ=255)                                        ttgttCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCTACATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTc                                                                                                          >  1:471967/1‑150 (MQ=255)                                                             cagcagcagTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGaa                                                                                     <  2:871329/150‑1 (MQ=255)                                                              tttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaGGTGGCCA‑GCTTCATCGCCACCTg                                                                                                                                                 >  2:419960‑M1/66‑89 (MQ=255)                                                              tttttcgccctgatcatccccaaggaatacggcggcaagggcttctccgcctacgcccactcccaGGTGGCCA‑GCTTCATCGCCACCTg                                                                                                                                                 <  1:419960‑M1/24‑1 (MQ=255)                                                                cagcagTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGaaaaa                                                                                  <  2:284762/150‑1 (MQ=255)                                                                  gcagTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGc                                                                                >  1:493299/1‑150 (MQ=255)                                                                            aGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCtt                                                                      <  1:656375/150‑1 (MQ=255)                                                                               gcacAGGGAGTTGGGAACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAAAAAATCCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGat                                                                   <  2:709785/147‑1 (MQ=255)                                                                                     ggAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGc                                                             >  2:247230/1‑150 (MQ=255)                                                                                        gTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCa                                                          <  2:1126391/150‑1 (MQ=255)                                                                                        gTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCa                                                          <  2:493299/150‑1 (MQ=255)                                                                                        atacggcggcaagggcttctccgcctacgcccactaccaGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAg                                                                                                                           >  1:510798‑M1/40‑85 (MQ=255)                                                                                        atacggcggcaagggcttctccgcctacgcccactaccaGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAg                                                                                                                           <  2:510798‑M1/46‑1 (MQ=255)                                                                                               aCCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCg                                                   <  1:1129701/150‑1 (MQ=255)                                                                                                  aTCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGggc                                                >  1:373202/1‑150 (MQ=255)                                                                                                   tCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGggcg                                               <  2:320088/150‑1 (MQ=255)                                                                                                        cttctccgcctacgcccactcccaggtggcgatgaagctggccaccTGGTAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTAt                                                                                                            >  1:510798‑M2/47‑85 (MQ=255)                                                                                                        cttctccgcctacgcccactcccaggtggcgatgaagctggccaccTGGTAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTAt                                                                                                            <  2:510798‑M2/39‑1 (MQ=255)                                                                                                           tccgcctacgcccactcccaGGTGGCGATGAAGC‑TGGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTcc                                       <  1:419813‑M1/130‑1 (MQ=255)                                                                                                                cAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCTTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATc                                  >  1:78173/1‑150 (MQ=255)                                                                                                                  ggTCGCCGCTCCGGGTGGTCA‑GCTTCATCGCCACCTGGGAGTGGGCGCAGGAAGCACGTTGAAGGCTGGGATGACCCGCGGCGATAAACAGGTAGAACAAGCCATGTTGGTGGATTTGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCt                                <  1:252689/150‑1 (MQ=255)                                                                                                                     gcccactcccaggtggcgatgaagctggccaccTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTgg                              <  2:419813‑M2/117‑1 (MQ=255)                                                                                                                      gccgcTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGAAAAAAAAAAAAAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGcc                            <  2:998064/150‑1 (MQ=255)                                                                                                                              caggtggcgatgaagctggccaccTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGaaaaa                                                                                  >  2:419960‑M2/25‑89 (MQ=255)                                                                                                                              caggtggcgatgaagctggccaccTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGaaaaa                                                                                  <  1:419960‑M2/65‑1 (MQ=255)                                                                                                                                      a‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTg            <  2:471967/150‑1 (MQ=255)                                                                                                                                          ttCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGATAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGAcc         >  2:554386/1‑150 (MQ=255)                                                                                                                                             aTCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATg      <  1:12981/150‑1 (MQ=255)                                                                                                                                              tCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATgg     >  2:846325/1‑150 (MQ=255)                                                                                                                                               cGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGgc    <  1:890552/150‑1 (MQ=255)                                                                                                                                                 ccaccTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGCCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGgcgc  >  2:67576‑M2/6‑150 (MQ=255)                                                                                                                                                     cTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGc                                                             >  2:720259‑M2/2‑87 (MQ=255)                                                                                                                                                     cTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGc                                                             <  1:720259‑M2/86‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                 TTCCTCGCCACGGGCCAGGCGCGGCAGGTAGCGGTTGCGTTGTTCGTCGGTGCCGTAGTGCAGCAGCAGTTCGGCAGGGCCCAGGGAGTTGGGCACCATCACCGTGGAGGCCAGGTCGCCGCTCCGGGTGGCCA‑GCTTCATCGCCACCTGGGAGTGGGCGTAGGCGGAGAAGCCCTTGCCGCCGTATTCCTTGGGGATGATCAGGGCGAAAAAGCCATGTTGCTTGATATGTGCCCAGGCTTCGGGCGGCAGGTCCAGATCCTGGCCAATCTGCCAGTCGCTGACCATGGCGC  >  NC_002947/2136083‑2136375

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.