New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2162588 =	49 (1.130)	5 (0.120)	5/242	NT	11.0%	intergenic (+227/‑595)	yceG/PP_5482	septation protein/hypothetical protein
	?	NC_002947	2162638 =	34 (0.820)					intergenic (+277/‑545)	yceG/PP_5482	septation protein/hypothetical protein

GCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGCCCCTGCGTGAAACGGTCACACAGCACCACAGCCCCGCGGGCCAGCGCCGGGCGGATGACCTGCGCCAGGTGCTGGGCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2162741‑2162588 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCATT  >  NC_002947/2162638‑2162786                                                                                                                                                                                                                                                                                                                 GCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGCCCCTGCGTGAAACGGTCACACAGCACCACAGCCCCGCGGGCCAGCGCCGGGCGGATGACCTGCGCCAGGTGCTGGGCG                                                                                                                                                           >  1:612772/1‑150                                                                                                         CCCGCGGGCCAGCGCCGGGCGGATGACCTGCGCCAGGTGCTGGGCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGC                                                     >  1:323613/1‑148                                                                                                         CCCGCGGGCCAGCGCCGGGCGGATGACCTGCGCCAGGTGCTGGGCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGC                                                     <  2:323613/148‑1                                                                                                                GCCAGAGCCGGGCGGATGACCTGCGCCAGGTGCTGGGCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAG                                            >  2:347275/1‑150                                                                                                                       CCGGGCGGATGACCTGCGCCAGGTGCTGGGCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTT                                                                                                            <  1:642286/79‑1                                                                                                                       CCGGGCGGATGACCTGCGCCAGGTGCTGGGCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTT                                                                                                            >  2:642286/1‑79                                                                                                                                                        GGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCA    >  2:747734/1‑150                                                                                                                                                         GGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCAT   <  1:837218/150‑1                                                                                                                                                          GGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCATT  <  1:747734/150‑1                                                                                                                                                          GGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCATT  <  2:404145/150‑1                                                                                                                                                                                                                                                                                                                 GCTTAGGCGACCAAACCTAGCTCACCATCAAATTTCTCTTCATGTTTACCTTGAGCATTAAAAGAATATAGCCCCTGCGTGAAACGGTCACACAGCACCACAGCCCCGCGGGCCAGCGCCGGGCGGATGACCTGCGCCAGGTGCTGGGCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2162741‑2162588 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCATT  >  NC_002947/2162638‑2162786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.