New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2162588 =	49 (1.130)	5 (0.120)	5/242	NT	11.0%	intergenic (+227/‑595)	yceG/PP_5482	septation protein/hypothetical protein
	?	NC_002947	2162638 =	34 (0.820)					intergenic (+277/‑545)	yceG/PP_5482	septation protein/hypothetical protein

AGGCGGTACGCCGCTGGCGGAAAAGGTGCGTGAACTGTTGCTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCATT  >  NC_002947/2162490‑2162786                                                                                                                                                      |                                                                                                                                                     aGGCGGTACGCCGCTGGCGGAAAAGGTGCGTGAACTGTTGCTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGc                                                                                                                                                     >  2:225954/1‑150 (MQ=255)   gCGGTACGCCGCTGGCGGAAAAGGTGCGTGAACTGTTGCTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCtg                                                                                                                                                   >  1:158643/1‑150 (MQ=255)   gCGGTACGCCGCTGGCGGAAAAGGTGCGTGAACTGTTGCTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCtg                                                                                                                                                   >  1:713782/1‑150 (MQ=255)    cGGTACGCCGCTGGCGGAAAAGGTGCGTGAACTGTTGCTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCtgt                                                                                                                                                  <  2:158643/150‑1 (MQ=255)    cGGTACGCCGCTGGCGGAAAAGGTGCGTGAACTGTTGCTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCtgt                                                                                                                                                  <  2:713782/150‑1 (MQ=255)     ggTACGCCGCTGGCGGAAAAGGTGCGTGAACTGTTGCTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCtgtg                                                                                                                                                 >  1:45339/1‑150 (MQ=255)            cgcTGGCGGAAGAGGTGCGTGAACTCTTGCTGACTCCCAGCGACGAACGCATGGCGGCCGACAC‑CGAGCTGCTGCCGGTGTTCGCCTCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCTTCGCTTGCCCGCGGGGCTGTCGTGCttt                                                                                                                                          <  2:410481/150‑3 (MQ=255)            cgcTGGCGGAAAAGGTGCGAGACATGGTGCTGACGCCTAGTGACGAAGGCATGGCGGCCGACACACTATATGC‑GCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCtgt                                                                                                                                          <  1:20447/150‑1 (MQ=255)                              gTGAACTGTTGCTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAgg                                                                                                                        >  1:1019639/1‑150 (MQ=255)                                    tGTTGCTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCtat                                                                                                                  <  2:221348/150‑1 (MQ=255)                                         cTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGttt                                                                                                                                <  2:924859/131‑1 (MQ=255)                                         cTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGttt                                                                                                                                >  1:924859/1‑131 (MQ=255)                                         cTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCt                                                                                                             <  1:139304/150‑1 (MQ=255)                                          tGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCtt                                                                                                            >  2:837218/1‑150 (MQ=255)                                          tGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCtt                                                                                                            >  1:974772/1‑150 (MQ=255)                                               cccAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAAt                                                                                                       <  2:504013/150‑1 (MQ=255)                                                ccAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGGTAGCCCGTGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATg                                                                                                      <  1:412283/150‑1 (MQ=255)                                                 cAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGCCTACATTCTCTTAATGc                                                                                                     >  2:904890/1‑150 (MQ=255)                                                     gacgaAGGCAGGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCaa                                                                                                 <  2:866405/150‑1 (MQ=255)                                                      acgaAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAg                                                                                                <  2:396053/150‑1 (MQ=255)                                                       cgaAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAgg                                                                                               <  2:471842/150‑1 (MQ=255)                                                             cgtGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACa                                                                                         <  1:904890/148‑1 (MQ=255)                                                              aTGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACAt                                                                                        >  1:1127293/1‑150 (MQ=255)                                                              aTGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACAt                                                                                        >  1:1025778/1‑150 (MQ=255)                                                                 gcggcCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCAAGCCGATGCTATATTCTTTTAATGCTCAAGGTAAACATGaa                                                                                     <  1:88987/150‑1 (MQ=255)                                                                      cGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGaa                                                                                >  1:404145/1‑150 (MQ=255)                                                                        acac‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAAt                                                                              <  2:1127293/150‑1 (MQ=255)                                                                             cGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGa                                                                          <  2:379226/150‑1 (MQ=255)                                                                             cGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGa                                                                          <  2:881533/150‑1 (MQ=255)                                                                             cGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGa                                                                          <  2:847470/150‑1 (MQ=255)                                                                               aGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATg                                                                        >  1:704412/1‑150 (MQ=255)                                                                                    ctgctgGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAg                                                                   <  1:225954/150‑1 (MQ=255)                                                                                        tgGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAg                                                               >  1:387224/1‑150 (MQ=255)                                                                                                    cccgcgggccagcgccgggcggatgacctgcgccaggtgctgggcgcgggGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGc                                                     <  2:323613‑M2/98‑1 (MQ=255)                                                                                                    cccgcgggccagcgccgggcggatgacctgcgccaggtgctgggcgcgggGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGc                                                     >  1:323613‑M2/51‑148 (MQ=255)                                                                                                        CGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGc                                               >  1:612772‑M1/1‑150 (MQ=255)                                                                                                          cccAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCa                                             <  2:1025778/150‑1 (MQ=255)                                                                                                           gccagagccgggcggatgacctgcgccaggtgctgggcgcgggGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAg                                            >  2:347275‑M2/44‑150 (MQ=255)                                                                                                                 ccTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAAt                                      <  2:974772/150‑1 (MQ=255)                                                                                                                  ccgggcggatgacctgcgccaggtgctgggcgcgggGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCtt                                                                                                            <  1:642286‑M2/43‑1 (MQ=255)                                                                                                                  ccgggcggatgacctgcgccaggtgctgggcgcgggGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCtt                                                                                                            >  2:642286‑M2/37‑79 (MQ=255)                                                                                                                   tGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAANTCa                                    <  2:704412/150‑1 (MQ=255)                                                                                                                       gcAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCg                                >  2:465651/1‑150 (MQ=255)                                                                                                                            tCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCtt                                                                                                            >  2:77657/1‑69 (MQ=255)                                                                                                                            tCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCtt                                                                                                            <  1:77657/69‑1 (MQ=255)                                                                                                                                                   gggGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCa    >  2:747734‑M2/4‑150 (MQ=255)                                                                                                                                                    ggGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCAt   <  1:837218‑M2/148‑1 (MQ=255)                                                                                                                                                     gGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCAtt  <  1:747734‑M2/149‑1 (MQ=255)                                                                                                                                                     gGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCAtt  <  2:404145‑M2/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     AGGCGGTACGCCGCTGGCGGAAAAGGTGCGTGAACTGTTGCTGACGCCCAGCGACGAAGGCATGGCGGCCGACAC‑CGAGCTGCTGCTGGTGTTCGCCGCCCGCGCCCAGCACCTGGCGCAGGTCATCCGCCCGGCGCTGGCCCGCGGGGCTGTGGTGCTGTGTGACCGTTTCACGCAGGGGCTATATTCTTTTAATGCTCAAGGTAAACATGAAGAGAAATTTGATGGTGAGCTAGGTTTGGTCGCCTAAGCCAGTAAAATCAGGCGATTCAGCGTAGATCATGGCAGCGTAGCATT  >  NC_002947/2162490‑2162786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.