New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2981909	47 (1.080)	3 (0.070)	3/244	NT	5.9%	coding (499/1734 nt)	PP_2607	hypothetical protein
	?	NC_002947	= 2981934	51 (1.230)					coding (474/1734 nt)	PP_2607	hypothetical protein

AATGCGTTGCCGGTGGTAAGCCGGGTGCCGCGTGGGTGCTGCAGGCGGTCGCGCGCGTAACGCGCCATCAACTTCAGGCAATGCCACAGCGACCTGGGTGAGCGGCGAATGCTGAGGAAATGCTGGATATCCACCCGGTTGACCATCATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2981758‑2981909 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccACCGCCCGGCATGCTGCTGTTCGGCGGCATGATG  <  NC_002947/2981934‑2981901                                                                                                                                                                                            AATGCGTTGCCGGTGGTAAGCCGGGTGCCGCGTGGGTGCTGCAGGCGGTCGCGCGCGTAACGCGCCATCAACTTCAGGCAATGCCACAGCGACCTGGGTGAGCGGCGAATGCTGAGGAAATGCTGGATATCCACCCGGTTGACCATCATG                                      >  1:575562/1‑150  ATGCGTTGCCGGTGGTAAGCCGGGTGCCGCGTGGGTGCTGCAGGCGGTCGCGCGCGTAACGCGCCATCAACTTCAGGCAATGCCACAGCGACCTGGGTGAGCGGCGAATGCTGAGGAAATGCTGGATATCCACCCGGTTGACCATCATGC                                     >  2:413855/1‑150                                     TGCTGCAGGCGGTCGCGCGCGTAACGCGCCATCAACTTCAGGCAATGCCACAGCGACCTGGGTGAGCGGCGAATGCTGAGGAAATGCTGGATATCCACCCGGTTGACCATCATGCCACCGCCCGGCATGCTGCTGTTCGGCGGCATGATG  <  2:760676/150‑1                                                                       ACTTCAGGCAATGCCACAGCGACCTGGGTGAGCGGCGAATGCTGAGGAAATGCTGGATATCCACCCGGTTGACCATCATGCCACCGCCCGGCATGCTGCTGTTCGGCGGCA       <  1:956122/111‑1                                                                       ACTTCAGGCAATGCCACAGCGACCTGGGTGAGCGGCGAATGCTGAGGAAATGCTGGATATCCACCCGGTTGACCATCATGCCACCGCCCGGCATGCTGCTGTTCGGCGGCA       >  2:956122/1‑111                                                                                                                                                                                            AATGCGTTGCCGGTGGTAAGCCGGGTGCCGCGTGGGTGCTGCAGGCGGTCGCGCGCGTAACGCGCCATCAACTTCAGGCAATGCCACAGCGACCTGGGTGAGCGGCGAATGCTGAGGAAATGCTGGATATCCACCCGGTTGACCATCATGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2981758‑2981909 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgccACCGCCCGGCATGCTGCTGTTCGGCGGCATGATG  <  NC_002947/2981934‑2981901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.