New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3179966 = | 36 (0.830) | 5 (0.120) | 5/244 | NT | 12.7% | coding (751/1953 nt) | PP_2790 | sigma‑54 dependent sensory box protein |
? | NC_002947 | 3180013 = | 34 (0.820) | coding (704/1953 nt) | PP_2790 | sigma‑54 dependent sensory box protein |
CTTGCGCAGCTGCTGGACCTGCCGGTTAGCGCAGCGCTGGGCCGGCCGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3180017‑3179966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTTGGCGATCTCGACGCGTTGAGTGTCGAGAATGCCCAGGGCTTCCTCCAGCG > NC_002947/3180013‑3180160 CTTGCGCAGCTGCGGGACCTGCCGGTTAGCGCAGCGCTGGGCCGGCCGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTT > 2:856351/1‑150 GCGCAGCTGCTGGACCTGCCGGTTAGCGCAGCGCTGGGCCGGCCGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGAC < 1:833822/93‑1 GCGCAGCTGCTGGACCTGCCGGTTAGCGCAGCGCTGGGCCGGCCGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGAC > 2:833822/1‑93 GCTGGACCTGCCGGTTAGCGCAGCGCTGGGCCGGCCGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTTGGCGATCTCGA > 1:240979/1‑150 GCAGCGCTGGGCCGGCCGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTTGGCGATCTCGACGCGTTGAGTGTCGAGAAT < 1:856351/150‑1 CTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCAATTTTCGATCTCGACGCGTTGAGTGTCGAGAATGCCCAGGGCTTCCTCCAG > 2:759031/1‑150 TGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTTGGCGATCTCGACGCGTTGAGTGTCGAGAATGCCCAGGGCTTCCTCCAGC < 2:245091/150‑1 GCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTTGGCGATCTCGACGCGTTGAGTGTCGAGAATGCCCAGGGCTTCCTCCAGCG < 2:845910/150‑1 CTTGCGCAGCTGCTGGACCTGCCGGTTAGCGCAGCGCTGGGCCGGCCGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3180017‑3179966 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTTGGCGATCTCGACGCGTTGAGTGTCGAGAATGCCCAGGGCTTCCTCCAGCG > NC_002947/3180013‑3180160 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |