New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3179966 =	36 (0.830)	5 (0.120)	5/244	NT	12.7%	coding (751/1953 nt)	PP_2790	sigma‑54 dependent sensory box protein
	?	NC_002947	3180013 =	34 (0.820)					coding (704/1953 nt)	PP_2790	sigma‑54 dependent sensory box protein

GTCAGGACCAGGCCGGTACGTTCGCCGTTCTCCAGGATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTTGG  >  NC_002947/3179818‑3180112                                                                                                                                                     |                                                                                                                                                   cgctggaggaagccctgggcattctcgacactcaacgcgtcgagatcgccaaacggcggcatctgaatgccgtgctgcggcatatccccgccggcgtagcagcggtcgacaaccaaggcgtggtgcagtcgctcaaccctgcccttgcgc                                                                                                                                                   <  2:845910‑M1/2‑1 (MQ=255)  tCAGGACCAGGCCGGTACGTTCGCCGTTCTCCAGGATAGGCAGCAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCTTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCa                                                                                                                                                  >  1:340792/1‑150 (MQ=255)  gctggaggaagccctgggcattctcgacactcaacgcgtcgagatcgccaaacggcggcatctgaatgccgtgctgcggcatatccccgccggcgtagcagcggtcgacaaccaaggcgtggtgcagtcgctcaaccctgcccttgcGCa                                                                                                                                                  <  2:245091‑M1/3‑1 (MQ=255)   ctggaggaagccctgggcattctcgacactcaacgcgtcgagatcgaaaattggcggcatctgaatgccgtgctgcggcatatccccgccggcgtagcagcggtcgacaaccaaggcgtggtgcagtcgctcaaccctgcccttgcGCAg                                                                                                                                                 >  2:759031‑M1/147‑150 (MQ=255)      gACCAGGCCGGTACGTTCGCCGTTCTCCAGGATAGGCAGTAATTTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGcgg                                                                                                                                              <  1:429826/150‑1 (MQ=255)           ggCCGGTACGTTCGCCGTTCTCCAGGATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCtgctgc                                                                                                                                                   <  2:940066/140‑1 (MQ=255)           ggCCGGTACGTTCGCCGTTCTCCAGGATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCtgctgc                                                                                                                                                   >  1:940066/1‑140 (MQ=255)                     ttCGCCGTTCTCCAGGATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGGTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAgcgctgc                                                                                                                               >  2:292586/1‑150 (MQ=255)                     attctcgacactcaacgcgtcgagatcgccaaacggcggcatctgaatgccgtgctgcggcatatccccgccggcgtagcagcggtcgacaaccaaggcgtggtgcagtcgctcaaccctgcccttgcGCAGCGGCCGGCCCAgcgctgc                                                                                                                               <  1:856351‑M1/22‑1 (MQ=255)                      tCGCCGTTCTCCAGGATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAgcgctgcg                                                                                                                              <  1:216945/150‑1 (MQ=255)                           gTTCTCCAGGATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAAc                                                                                                                         <  1:116937/150‑1 (MQ=255)                               tcCAGGATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTaa                                                                                                                          >  2:339338/1‑145 (MQ=255)                               tcCAGGATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTaa                                                                                                                          <  1:339338/145‑1 (MQ=255)                                 cAGGATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAg                                                                                                                   <  2:186569/150‑1 (MQ=255)                                    gATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTc                                                                                                                >  2:1053606/1‑150 (MQ=255)                                    gATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTc                                                                                                                >  2:574607/1‑150 (MQ=255)                                    gATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTc                                                                                                                <  1:1053606/150‑1 (MQ=255)                                    gATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTc                                                                                                                <  1:367319/150‑1 (MQ=255)                                        tcgagatcgccaaacggcggcatctgaatgccgtgctgcggcatatccccgccggcgtagcagcggtcgacaaccaaggcgtggtgcagtcgctcaaccctgcccttgcGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCcagc                                                                                                            >  1:240979‑M1/110‑150 (MQ=255)                                         gCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCcagca                                                                                                           >  1:581894/1‑150 (MQ=255)                                                   aaacggcggcatctgaatgccgtgctgcggcatatccccgccggcgtagcagcggtcgacaaccaaggcgtggtgcagtcgctcaaccctgcccttgcGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCCGCAGCTGCGCAAg                                                                                                 >  2:856351‑M1/99‑150 (MQ=255)                                                     tCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAggg                                                                                               >  1:189852/1‑150 (MQ=255)                                                         cacGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAgcgctgc                                                                                                                               <  1:1009835/114‑1 (MQ=255)                                                         cacGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAgcgctgc                                                                                                                               >  2:1009835/1‑114 (MQ=255)                                                               gTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAg                                                                                     <  1:428601/150‑1 (MQ=255)                                                                     gccgagccgCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCgac                                                                                                                     <  2:914460/112‑3 (MQ=255)                                                                     gccgagccgCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCgac                                                                                                                     >  1:914460/1‑110 (MQ=255)                                                                          gccgCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGcacca                                                                          >  2:804263/1‑150 (MQ=255)                                                                           ccgCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGcaccac                                                                         >  1:245091/1‑150 (MQ=255)                                                                                tCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCCACTGCACCACGCCtt                                                                    <  1:574607/150‑1 (MQ=255)                                                                                       gTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTc                                                             <  2:650294/150‑1 (MQ=255)                                                                                             ttcACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCgc                                                       >  1:1090260/1‑150 (MQ=255)                                                                                                     tGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAgg                                                                                                <  1:683399/101‑1 (MQ=255)                                                                                                     tGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAgg                                                                                                >  2:683399/1‑101 (MQ=255)                                                                                                         gtcgacaaccaaggcgtggtgcagtcgctcaaccctgcccttgcGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTgcgc                                                                                                    <  1:833822‑M1/49‑1 (MQ=255)                                                                                                         gtcgacaaccaaggcgtggtgcagtcgctcaaccctgcccttgcGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTgcgc                                                                                                    >  2:833822‑M1/45‑93 (MQ=255)                                                                                                            cTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCggg                                        >  1:112823/1‑150 (MQ=255)                                                                                                                  cgcCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATg                                  <  2:189852/150‑1 (MQ=255)                                                                                                                    ccTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGcc                                >  1:391986/1‑150 (MQ=255)                                                                                                                    ccTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAAAAGTTGCGCAAGGGCAGGGCTGAACGCGCATACCCCGGCTGGGTTTTCGGCCGCTGCTACGCCGGCGGGGATATGcc                                >  1:805463/1‑150 (MQ=255)                                                                                                                       gctgcAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCgca                             >  2:143917/1‑150 (MQ=255)                                                                                                                              gTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGc                      <  1:41324/150‑1 (MQ=255)                                                                                                                              gTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCCGGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGc                      >  2:125174/1‑150 (MQ=255)                                                                                                                              gTCCAGTTACGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTAGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGc                      >  2:379337/1‑150 (MQ=255)                                                                                                                                 cAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCAtt                   >  2:754263/1‑150 (MQ=255)                                                                                                                                       cGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATg             >  1:1069776/1‑150 (MQ=255)                                                                                                                                        gggCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATgc            >  1:44025/1‑150 (MQ=255)                                                                                                                                                ctgctgCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAgg                                                                                           <  2:512512/63‑1 (MQ=255)                                                                                                                                                ctgctgCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAgg                                                                                           >  1:512512/1‑63 (MQ=255)                                                                                                                                                ctgctgCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCACCGGCTACGGATGGGCAGGGTTGAGGGACTGCACCGCGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGttt    >  2:680556/1‑150 (MQ=255)                                                                                                                                                 tgctgcAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTTg   >  2:814166/1‑150 (MQ=255)                                                                                                                                                  gctgcAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTTgg  <  1:544478/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GTCAGGACCAGGCCGGTACGTTCGCCGTTCTCCAGGATAGGCAGTAAATTGCTCACCACGGCGTGCGAGCCGAGCCGCATCACGCGGTTTTCTTCACCCGTGCCTTCCTGCAGCGCCTGCTGCAGGTCCAGTTCCGGGCACAGCTGCTGCAGCGGCCGGCCCAGCGCTGCGCTAACCGGCAGGTCCAGCAGCTGCGCAAGGGCAGGGTTGAGCGACTGCACCACGCCTTGGTTGTCGACCGCTGCTACGCCGGCGGGGATATGCCGCAGCACGGCATTCAGATGCCGCCGTTTGG  >  NC_002947/3179818‑3180112

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.