New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3251122 =	61 (1.410)	5 (0.120)	4/246	NT	8.4%	coding (464/546 nt)	ureJ	urease accessory protein UreJ
	?	NC_002947	3251156 =	50 (1.190)					coding (498/546 nt)	ureJ	urease accessory protein UreJ

TAAAACCACCCACCGGCAAGCCGGGGCTGGCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3251273‑3251122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTACCTATTCGCAAGGCCTGGAGTGGGCGGTC  >  NC_002947/3251156‑3251302                                                                                                                                                                                                                                                                                                               TAAAACCACCCACCGGCAAGCCGGGGCTGGCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAG                                                                                                                                                       <  2:590606/150‑1                                                                                                       CAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGC                                                                                                           >  1:494162/1‑92                                                                                                       CAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGC                                                                                                           <  2:494162/92‑1                                                                                                                            CTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGGCTTTGGCGGTGGCCTGTTGGCTGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTG                                                                                >  1:573800/1‑98                                                                                                                            CTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGGCTTTGGCGGTGGCCTGTTGGCTGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTG                                                                                <  2:573800/98‑1                                                                                                                             TGCAGGCCGCTGTGGCGGCCTGCAGAAGGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTACC                             >  1:1057996/1‑150                                                                                                                                                        GGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCGGCACCGGCTGGCCGGTGGGTGGGGTTGCCGATTCGCAAGGCCTGGAGTGGGCGGTC  >  2:123991/1‑150                                                                                                                                                        GGCCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTACCTATTCGCAAGGCCTGGAGTGGGCGGTC  >  2:124001/1‑150                                                                                                                                                                                                                                                                                                               TAAAACCACCCACCGGCAAGCCGGGGCTGGCCAACTGCAGCAGGCGCAGCAGCGCCAGGTCGCTGTTCATCAACCGGCCAGTACCAGCGCGGCGCCGGCCAACAGGCCACCGCCAAAGGCCTTCTGCAGGCCGCTGTGGCGGC‑‑GCAGCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3251273‑3251122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcCTTTGGCGGTGGCCTGTTGGCCGGCGCCGCGCTGGTACTGGCCGGTTGATGAACAGCGACCTGGCGCTGCTGCGCCTGCTGCAGTTGGCCAGCCCCGGCTTGCCGGTGGGTGGTTTTACCTATTCGCAAGGCCTGGAGTGGGCGGTC  >  NC_002947/3251156‑3251302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.