New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3538258	16 (0.370)	4 (0.100)	4/238	NT	20.5%	coding (37/1116 nt)	PP_5587	hypothetical protein
	?	NC_002947	= 3538266	16 (0.390)					coding (45/1116 nt)	PP_5587	hypothetical protein

CTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3538108‑3538258 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacggcaaGACCAAGATTGCCGTTGCAATGCGAGTTGTTCTAAGAAGAGGCATTAAATGTTCTTATTAAAGGCAAGATCAAGGAACGACCAGCGTATCGCCAGCCTGAAGTTGGATGTTGGTGGACATGTCCCGCCCAGACACCAGGTCC  <  NC_002947/3538266‑3538125                                                                                                                                                                                                                                                                                                       CTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCc                                                                                                                                                 >  1:76854/1‑149                            TCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGG                                                                                                                                                   <  1:97708/121‑1                            TCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTCGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGG                                                                                                                                                   >  2:97708/1‑121                                                                                                          GAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAAGACCAAGATTGCCG                                                                                                                                  >  1:631313/1‑60                                                                                                          GAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAAGACCAAGATTGCCG                                                                                                                                  <  2:631313/60‑1                                                                                                                                   CAACTCGCATTGCAACGGCAAGACCAAGATTGCCGTTGCAATGCGAGTTG                                                                                                                   <  1:610052/50‑1                                                                                                                                   CAACTCGCATTGCAACGGCAAGACCAAGATTGCCGTTGCAATGCGAGTTG                                                                                                                   >  2:610052/1‑50                                                                                                                                                AACGGCAAGACCAAGATTGCCGTTGCAATGCGAGTTGTTCTAAGAAGAGGCATTAAATGTTCTTATTAAAGGCAAGATCAAGGAACGACCAGCGTATCGCCAGCCTGAAGTTGGATGTTGGTGGACATGTCCCGCCCAGACACCAGGTCC  <  1:670262/150‑1                                                                                                                                                                                                                                                                                                       CTGCCCGTGCGATATAAGGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3538108‑3538258 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacggcaaGACCAAGATTGCCGTTGCAATGCGAGTTGTTCTAAGAAGAGGCATTAAATGTTCTTATTAAAGGCAAGATCAAGGAACGACCAGCGTATCGCCAGCCTGAAGTTGGATGTTGGTGGACATGTCCCGCCCAGACACCAGGTCC  <  NC_002947/3538266‑3538125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.