New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3538258	16 (0.370)	4 (0.100)	4/238	NT	20.5%	coding (37/1116 nt)	PP_5587	hypothetical protein
	?	NC_002947	= 3538266	16 (0.390)					coding (45/1116 nt)	PP_5587	hypothetical protein

GGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAACGCGCACTA  >  NC_002947/3538125‑3538390                                                                                                                                              |                                                                                                                             ggACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCttgccgtt                                                                                                                      <  1:670262‑M2/150‑9 (MQ=255)             tGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGt                                                                                                          <  1:797019/150‑1 (MQ=255)                     aCATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTggcgg                                                                                                  >  1:317630/1‑150 (MQ=255)                                                  ggCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCg                                                                     >  2:712269/1‑150 (MQ=255)                                                      aTACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACAt                                                                 >  1:292257/1‑150 (MQ=255)                                                       tACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATc                                                                <  2:670262/150‑1 (MQ=255)                                                                                 tttAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGc                                      >  2:1081039/1‑150 (MQ=255)                                                                                  ttAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCt                                     <  1:712269/150‑1 (MQ=255)                                                                                   taataaGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGAGAGCAACCCATTGCTg                                    >  1:386864/1‑150 (MQ=255)                                                                                                    gCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTc                                                            >  2:844499/1‑109 (MQ=255)                                                                                                    gCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTc                                                            <  1:844499/109‑1 (MQ=255)                                                                                                     ccTCTTCTTAGAACAACTCGCCTTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAg                  <  1:334131/150‑1 (MQ=255)                                                                                                     ccTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAg                  >  2:92830/1‑150 (MQ=255)                                                                                                        cttcttAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGGATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGt               <  1:12408/150‑1 (MQ=255)                                                                                                              aGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAAcg         <  2:916653/150‑1 (MQ=255)                                                                                                                  caacTCGCATTGCAACGGCAATCTTGGTCttgccgttgcaatgcgagttg                                                                                                         >  2:610052‑M2/1‑29 (MQ=255)                                                                                                                  caacTCGCATTGCAACGGCAATCTTGGTCttgccgttgcaatgcgagttg                                                                                                         <  1:610052‑M2/50‑22 (MQ=255)                                                                                                                    acTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAACGCGCACt   >  1:260971/1‑150 (MQ=255)                                                                                                                     cTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAACGCGCACta  >  1:580052/1‑150 (MQ=255)                                                                                                                                 cGGCAATCTTGGTCttgccgttgcaatgcgagttgttctaagaagaggcattaaatgttc                                                                                >  1:631313‑M2/1‑14 (MQ=255)                                                                                                                                 cGGCAATCTTGGTCttgccgttgcaatgcgagttgttctaagaagaggcattaaatgttc                                                                                <  2:631313‑M2/60‑47 (MQ=255)                                                                                                                                              |                                                                                                                             GGACCTGGTGTCTGGGCGGGACATGTCCACCAACATCCAACTTCAGGCTGGCGATACGCTGGTCGTTCCTTGATCTTGCCTTTAATAAGAACATTTAATGCCTCTTCTTAGAACAACTCGCATTGCAACGGCAATCTTGGTCTTGCCGTTCACGGACGCGGTACTGGCGGCAAATTGGCAGTCTACGGTGGTGGTACCGACATCCGTCGAATTCGACAGCAACCCATTGCTGTTGACCTCGGGGGAAAAGGGTATAACGCGCACTA  >  NC_002947/3538125‑3538390

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.