New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4563456 =	24 (0.550)	3 (0.070)	3/238	NT	12.1%	coding (449/2316 nt)	vgrG‑III	type VI secretion system protein
	?	NC_002947	4563523 =	21 (0.520)					coding (382/2316 nt)	vgrG‑III	type VI secretion system protein

CGCGCGGTTGCGTTCGAACTGGCGGATCTTTCAGCAGAAAACCGTGCCGCAGATTCTTGAACTCATGTTCAAGCGTCAGGGCATCACCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4563605‑4563456 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggtgaTGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGG  >  NC_002947/4563523‑4563608                                                                                                                                                                                                                                              CGCGCGGTTGCGTTCGAACTGGCGGATCTTTCAGCAGAAAACCGTGCCGCAGATTCTTGAACTCATGTTCAAGCGTCAGGGCATCACCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGGGTGA                                                                                        <  2:1097067/150‑1                                          CCGTGCCGCAGATTCTTGAACTCATGTTCAAGCGTCAGGGCATCACCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGG                                                                                            >  1:428418/1‑105                                          CCGTGCCGCAGATTCTTGAACTCATGTTCAAGCGTCAGGGCATCACCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGG                                                                                            <  2:428418/105‑1                                                                                       CCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTCCAGGCGGGTGATGCCCTGACGCTTGAACAGGAGTTCAAGAATCCGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACTCAACCGCGCGCGG  >  2:605458/1‑150                                                                                        CCGCTTTGTGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTC                    <  2:232759/131‑1                                                                                        CCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCGGAAAGATCCGCCAGTTC                    >  1:232759/1‑131                                                                                                                                                                                                                                              CGCGCGGTTGCGTTCGAACTGGCGGATCTTTCAGCAGAAAACCGTGCCGCAGATTCTTGAACTCATGTTCAAGCGTCAGGGCATCACCCGCTTTGAGCTGAAAAGCAGCGCGCAGCACCAAGTGCGGGAGTTTTGTGTTCAGGCGGGTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4563605‑4563456 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggtgaTGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGG  >  NC_002947/4563523‑4563608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.