New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4563456 =	24 (0.550)	3 (0.070)	3/238	NT	12.1%	coding (449/2316 nt)	vgrG‑III	type VI secretion system protein
	?	NC_002947	4563523 =	21 (0.520)					coding (382/2316 nt)	vgrG‑III	type VI secretion system protein

TGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTC  >  NC_002947/4563381‑4563661                                                                                                                                               |                                                                                                                                           tgcCGGGCGCAGTGTTCGAAGCAGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGa                                                                                                                                     >  2:342849/1‑150 (MQ=255)    cGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGACGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGc                                                                                                                                  <  1:515821/150‑1 (MQ=255)          cAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAAc                                                                                                                            <  1:162235/150‑1 (MQ=255)           aGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGCTGGATGCAGTCGAGGTCGGTTTCACAAGACTGAAGACGAAACGCCCGCACTTGGTGCGGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACa                                                                                                                           >  2:971114/1‑150 (MQ=255)               ttCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGTCGATGGAGGAAGGCGGGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAg                                                                                                                       >  1:25365/1‑150 (MQ=255)                               aaCCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGc                                                                                                       <  1:245527/150‑1 (MQ=255)                                aCCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCa                                                                                                      >  1:540585/1‑150 (MQ=255)                                   ccTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACgg                                                                                                   >  1:537332/1‑150 (MQ=255)                                                        ggatgAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCtt                                                                                                                                <  2:595954/100‑1 (MQ=255)                                                        ggatgAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCtt                                                                                                                                >  1:595954/1‑100 (MQ=255)                                                         gatnAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCa                                                                             >  2:699066/1‑150 (MQ=255)                                                                tCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCTCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGaa                                                                                       >  1:1023881/1‑133 (MQ=255)                                                                tCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCTCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGaa                                                                                       <  2:1023881/133‑1 (MQ=255)                                                                            TCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACcgcgcg                                                          <  2:1097067‑M1/150‑1 (MQ=255)                                                                               cccgctttgagctgaaaagcagcgcgcagcaccaagtgcgggagttttgtgtccaggcgggtgaTGCCCTGACGCTTGAACAGGAGTTCAAGAATCCGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACTCAACCGCGCGCgg                                                       >  2:605458‑M2/65‑150 (MQ=255)                                                                                ccgctttgtgctgaaaagcagcgcgcagcaccaagtgcgggagttttgtgttcaggcgggtgaTGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTc                                                                         <  2:232759‑M2/68‑1 (MQ=255)                                                                                ccgctttgagctgaaaagcagcgcgcagcaccaagtgcgggagttttgtgttcaggcgggtgaTGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCGGAAAGATCCGCCAGTTc                                                                         >  1:232759‑M2/64‑131 (MQ=255)                                                                                CCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACgg                                                                                                   <  2:428418‑M1/105‑1 (MQ=255)                                                                                CCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACgg                                                                                                   >  1:428418‑M1/1‑105 (MQ=255)                                                                                          acaAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCgg                                            >  2:475913/1‑150 (MQ=255)                                                                                           caAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGc                                           <  2:650667/150‑1 (MQ=255)                                                                                             aaaCTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTc                                         <  1:342849/150‑1 (MQ=255)                                                                                                                tgcGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAgcgc                      <  2:540585/150‑1 (MQ=255)                                                                                                                   gcgcTGCTTTTCATCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTg                   <  1:499425/150‑1 (MQ=255)                                                                                                                            ttCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAg          >  2:215549/1‑150 (MQ=255)                                                                                                                              cAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGcc        <  1:971114/150‑1 (MQ=255)                                                                                                                                gCTCAAAGTGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCgg      <  1:500805/150‑1 (MQ=255)                                                                                                                                    aaaGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTc  <  1:475913/150‑1 (MQ=255)                                                                                                                                               |                                                                                                                                           TGCCGGGCGCAGTGTTCGAAGCGGTAGACGAACCCCTCTTCAGCGGCAAGGCGATGGATGAAGTCGAGGTCGGTTTCACCCGCCTGAACACAAAACTCCCGCACTTGGTGCTGCGCGCTGCTTTTCAGCTCAAAGCGGGTGATGCCCTGACGCTTGAACATGAGTTCAAGAATCTGCGGCACGGTTTTCTGCTGAAAGATCCGCCAGTTCGAACGCAACCGCGCGCGGGCCAGCTGCGGCTCGACCACGGCGTGGTAGCGCGTGCGACAAAAGCCGGTTTC  >  NC_002947/4563381‑4563661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.