New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4929832 =	45 (1.040)	3 (0.080)	3/232	NT	6.5%	coding (385/2244 nt)	cheA	chemotaxis histidine kinase CheA
	?	NC_002947	4929912 =	45 (1.140)					coding (305/2244 nt)	cheA	chemotaxis histidine kinase CheA

CTGCGCAAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4929988‑4929832 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggccgaacATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGCCC  >  NC_002947/4929912‑4930058                                                                                                                                                                                                                                                                                                                  CTGCGCAAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTG                                                                                                                                                            >  2:660138/1‑150  TGCGCAAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGG                                                                                                                                                           <  1:1048911/150‑1   GCGCAAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGC                                                                                                                                                          <  1:775564/150‑1                                                                            ATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACC                                                                                 >  1:282061/1‑150                                                                                    CCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCA                                                                                                  <  1:978618/125‑1                                                                                    CCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCA                                                                                                  >  2:978618/1‑125                                                                                                                          CGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAA                                                                                                                                                      <  1:51849/35‑1                                                                                                                          CGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAA                                                                                                                                                      >  2:51849/1‑35                                                                                                                                                    CTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCC         >  1:972336/1‑150                                                                                                                                                           AACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGCCC  >  2:226046/1‑150                                                                                                                                                                                                                                                                                                                  CTGCGCAAAGGTGAGCGCCGGGTCGATGCGGAACTGATGGATGTGGTGCTCGAGGCACTGGATACGGTCAACAGCATGTTCGGCCAGGTGCGCGAGCGTGCCGAAGTGACACCGGCCACCCCGGCGCTGCTGGCAGCGCTGTCGCGCCTGGCCGAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4929988‑4929832 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctggccgaacATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGCCC  >  NC_002947/4929912‑4930058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.