New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4929832 =	45 (1.040)	3 (0.080)	3/232	NT	6.5%	coding (385/2244 nt)	cheA	chemotaxis histidine kinase CheA
	?	NC_002947	4929912 =	45 (1.140)					coding (305/2244 nt)	cheA	chemotaxis histidine kinase CheA

CCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGCCC  >  NC_002947/4929763‑4930058                                                                                                                                                      |                                                                                                                                                   ccggcGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACa                                                                                                                                                    >  2:906836/1‑150 (MQ=255)  ggtgagcgccgggtcgatgcggaactgatggatgtggtgctcgaggcactggatacggtcaacagcatGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACAt                                                                                                                                                   >  1:282061‑M1/69‑150 (MQ=255)          cAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGa                                                                                                                                           >  1:441342/1‑150 (MQ=255)          cAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGa                                                                                                                                           <  1:424230/150‑1 (MQ=255)            gCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGAcc                                                                                                                                         <  2:423660/150‑1 (MQ=255)            gCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGAcc                                                                                                                                         <  1:906836/150‑1 (MQ=255)              caccacGTCGGCAACCGGTGCCGGTACGGGCGCCGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGt                                                                                                                                       >  2:747948/1‑150 (MQ=255)                 cacGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATc                                                                                                                                    <  2:991279/150‑1 (MQ=255)                  acGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATcc                                                                                                                                   >  1:939906/1‑150 (MQ=255)                   cGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCa                                                                                                                                  <  2:311069/150‑1 (MQ=255)                    gTCGGCAACCGGTGCCGGTACGGGCGCCGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCGGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAg                                                                                                                                 <  1:747948/150‑1 (MQ=255)                          aaCCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTc                                                                                                                           <  1:675390/150‑1 (MQ=255)                           aCCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCg                                                                                                                          >  1:1004193/1‑150 (MQ=255)                             cGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAg                                                                                                                        <  2:211832/150‑1 (MQ=255)                                         gggCGCTGCAACAGCTTCTGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCAcatccat                                                                                                            >  1:317404/1‑150 (MQ=255)                                         gggCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCAcatccat                                                                                                            <  1:983554/150‑1 (MQ=255)                                             gcTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGCACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCCCCTCCCTCAGt                                                                                                        >  2:86347/1‑150 (MQ=255)                                              cTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGtt                                                                                                       >  1:660138/1‑150 (MQ=255)                                              cTGCAACAGCTTCGGCTACTCGAGTTTCGGCCAGGCGCGACAGCGCTGCCCGCCGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGtt                                                                                                       <  1:607228/150‑1 (MQ=255)                                               tGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTc                                                                                                      <  1:812785/150‑1 (MQ=255)                                                  aaCAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGc                                                                                                   <  2:8415/150‑1 (MQ=255)                                                   aCAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTg                                                                                                                               <  2:25737/121‑1 (MQ=255)                                                   aCAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTg                                                                                                                               >  1:25737/1‑121 (MQ=255)                                                        ttCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGAc                                                                                             <  2:1015308/150‑1 (MQ=255)                                                             cTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGgc                                                                                        <  1:129488/150‑1 (MQ=255)                                                             cTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGgc                                                                                        <  1:418808/150‑1 (MQ=255)                                                                 cccAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGgcgc                                                                                      >  2:200003/1‑148 (MQ=255)                                                                 cccAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGgcgc                                                                                      <  1:200003/148‑1 (MQ=255)                                                                  ccAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTAt                                                                                                                                     >  1:543421/1‑100 (MQ=255)                                                                  ccAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTAt                                                                                                                                     <  2:543421/100‑1 (MQ=255)                                                                    atgttcggccaggtgcgcgagcgtgccgaagtgacaccggccaccccggcgctgctggcagcgctgtcgcgcctggccgaacATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCAcc                                                                                 >  1:282061‑M2/83‑150 (MQ=255)                                                                           gCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACATCGGCACGCTCCCGCCAAAGCCCAAACATGCGCAAGGCCGGATCCATGGCCTCGATCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTgcgc                                                                          >  2:970845/1‑150 (MQ=255)                                                                           GCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTgcgc                                                                          <  1:775564‑M1/150‑1 (MQ=255)                                                                            ccaggtgcgcgagcgtgccgaagtgacaccggccaccccggcgctgctggcagcgctgtcgcgcctggccgaacATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCa                                                                                                  <  1:978618‑M2/51‑1 (MQ=255)                                                                            ccaggtgcgcgagcgtgccgaagtgacaccggccaccccggcgctgctggcagcgctgtcgcgcctggccgaacATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCa                                                                                                  >  2:978618‑M2/75‑125 (MQ=255)                                                                            CCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCa                                                                         <  1:1048911‑M1/150‑1 (MQ=255)                                                                             CAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAg                                                                        >  2:660138‑M1/1‑150 (MQ=255)                                                                                       aGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAac                                                              <  1:291861/150‑1 (MQ=255)                                                                                           cTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATcc                                                                                                                                   >  2:654147/1‑77 (MQ=255)                                                                                           cTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATcc                                                                                                                                   <  1:101601/77‑1 (MQ=255)                                                                                           cTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATcc                                                                                                                                   >  2:101601/1‑77 (MQ=255)                                                                                           cTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATcc                                                                                                                                   <  1:654147/77‑1 (MQ=255)                                                                                              ccAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTAACCTTTGCGCAGGACGTCGAACACGTtct                                                       >  1:550899/1‑150 (MQ=255)                                                                                               cagcagCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGt                                                          <  2:547576/146‑1 (MQ=255)                                                                                               cagcagCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGt                                                          >  1:547576/1‑146 (MQ=255)                                                                                                  cagcGCCGGGCTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGc                                                   <  2:1048911/150‑1 (MQ=255)                                                                                                           ggTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGgca                                          <  2:1004193/150‑1 (MQ=255)                                                                                                              ggCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGgcagca                                       <  1:380384/150‑1 (MQ=255)                                                                                                                    tgtCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTccac                                 <  2:939906/150‑1 (MQ=255)                                                                                                                     gtCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTccacc                                <  1:794700/150‑1 (MQ=255)                                                                                                                               cACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCa                      <  2:441342/150‑1 (MQ=255)                                                                                                                                 cGCTGGCGCACCTGGCCGAAGATGCTGTTGACCGTAGCCAGTGCCTCGAGCACCACATCCATCAGTTCGCGTTTAACCCTGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGc                    <  2:317404/150‑1 (MQ=255)                                                                                                                                    tCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTga                 >  1:327268/1‑150 (MQ=255)                                                                                                                                         cACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTgaaggaa            <  1:242452/150‑1 (MQ=255)                                                                                                                                            ctggccgaacATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGcc         >  1:972336‑M2/11‑150 (MQ=255)                                                                                                                                                   aacATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGccc  >  2:226046‑M2/4‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   CCGGCGCTGCAGCCACCACGTCGGCAACCGGTGCCGGTACGGGCGCTGCAACAGCTTCGGCTGCCCCAGGTTCGGCCAGGCGCGACAGCGCTGCCAGCAGCGCCGGGGTGGCCGGTGTCACTTCGGCACGCTCGCGCACCTGGCCGAACATGCTGTTGACCGTATCCAGTGCCTCGAGCACCACATCCATCAGTTCCGCATCGACCCGGCGCTCACCTTTGCGCAGGACGTCGAACACGTTCTCGGCGATATGGCAGCACTCCACCAGCTCGTTCAGCTGAAGGAAGCCGGCGCCC  >  NC_002947/4929763‑4930058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.