| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4963796 = | 43 (0.990) | 3 (0.070) | 3/240 | NT | 6.7% | intergenic (‑97/+131) | fleS/fleQ | two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ |
| ? | NC_002947 | 4963899 = | 43 (1.050) | intergenic (‑200/+28) | fleS/fleQ | two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ | |||||
GTGAGGACCAGGCGGAGGATTGATGTTTGGGCTGGGTGTTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAACGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4963949‑4963796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgcaaCCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCCGCGCGCGCAACGATACCGTTGGC > NC_002947/4963899‑4964046 GTGAGGACCAGGCGGAGGATTGATGTTTGGGCTGGGTGTTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAAC < 1:321708/150‑1GTGAGGACCAGGCGGAGGATTGATGTTTGGGCTGGGTGTTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAAC < 2:117041/150‑1 GGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGT > 1:969309/1‑150 GTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTC > 2:188543/1‑150 GCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTC < 1:188543/150‑1 CGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCCGCGCGCGCAACGATACCGTT < 2:1083902/150‑1 CAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCCGCGCGCGCAACGATACCGTTGG < 2:1037702/150‑1 AACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCCGCGCGCGCAACGATACCGTTGGC > 2:750015/1‑150 GTGAGGACCAGGCGGAGGATTGATGTTTGGGCTGGGTGTTCGCCTTGGGGGTTGCGTTTGGGCGGGGTGTTCGCCTTGAGGTTTTTGTTTGGGCGGCGCTCGATCTCCGCGGCACAACAAAACTCACGGCGAACCCTTCTCGGTCTTAACGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4963949‑4963796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgcaaCCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTCCTCACCGCCCTGGCGGCTCATGCCGTACTTGCGCATTTTCTCGACCAGGGTGGTACGGCGAATACGCAAACGTTCAGCCGCGCGCGCAACGATACCGTTGGC > NC_002947/4963899‑4964046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |