New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4963796 = | 43 (0.990) | 3 (0.070) | 3/240 | NT | 6.7% | intergenic (‑97/+131) | fleS/fleQ | two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ |
? | NC_002947 | 4963899 = | 43 (1.050) | intergenic (‑200/+28) | fleS/fleQ | two‑component system sensor histidine kinase FleS/transcriptional regulator FleQ |
GGGTTTGCCCCTGCTGATCGGGGGCTCGGGATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTC > NC_002947/4963648‑4963944 | gccaacggtatcgttgcgcgcgcggctgaacgtttgcgtattcgccgtaccaccctggtcgagaaaatgcgcaagtacggcatgagccgccagggcggtgaggaccaggcggaggattgatgtttgggctgggtgttcgccttgggggtt > 2:750015‑M1/149‑150 (MQ=255) ccaacggtatcgttgcgcgcgcggctgaacgtttgcgtattcgccgtaccaccctggtcgagaaaatgcgcaagtacggcatgagccgccagggcggtgaggaccaggcggaggattgatgtttgggctgggtgttcgccttgggggTTg < 2:1037702‑M1/3‑1 (MQ=255) aacggtatcgttgcgcgcgcggctgaacgtttgcgtattcgccgtaccaccctggtcgagaaaatgcgcaagtacggcatgagccgccagggcggtgaggaccaggcggaggattgatgtttgggctgggtgttcgccttgggggTTGCg < 2:1083902‑M1/5‑1 (MQ=255) cccTGCTGCTCGGGGGCTCGGGATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAg > 1:705512/1‑150 (MQ=255) ctgctgATCGGGGGCTCGGGATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGAc < 1:260772/150‑1 (MQ=255) aTCGGGGGCTCGGGATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTTGGTTTGACGTAGGATTGCGTTAAGACCGATaa < 1:641342/150‑1 (MQ=255) tCGGGGGCTCGGGATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAg > 1:676056/1‑150 (MQ=255) gggggCTCGGGATACGTGGAAGACATGGAGAATCGTCAACTCTCACAGGGCTGCGCGGCATAAAACGGTTGGCTGCCGGCGGGAGAGCAAGAGCCGTGCCGGAGATGGGGGCTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAagg > 2:126781/1‑150 (MQ=255) ggggCTCGGGATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGt > 1:698853/1‑150 (MQ=255) gggCTCGGGCTACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGCCCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGCTTGGGTTTGACGTAGGATTGCGTTAAGACCGCGAAggggt > 2:447768/1‑148 (MQ=255) gggATACGTGGGCGACCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGt < 1:1076581/150‑1 (MQ=255) gATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGa < 1:134109/150‑1 (MQ=255) gATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGa < 1:772192/150‑1 (MQ=255) gggCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTttgt < 2:676056/150‑1 (MQ=255) ggCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGNGga < 2:698853/150‑1 (MQ=255) cGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGga < 2:76114/145‑1 (MQ=255) cGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGga > 1:76114/1‑145 (MQ=255) gTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGt < 1:36034/124‑1 (MQ=255) gTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGt > 2:36034/1‑124 (MQ=255) gagaaaatgcgcaagtacggcatgagccgccagggcggtgaggaccaggcggaggattgatgtttgggctgggtgttcgccttgggggTTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGcgccgc < 1:188543‑M1/62‑1 (MQ=255) ccgcgTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATACCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCCCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCgccgcc < 2:131305/149‑1 (MQ=255) gcgTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCca > 1:1014192/1‑150 (MQ=255) gTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCcaaa < 1:761380/150‑1 (MQ=255) gTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCCGTGATCGATGTCCTCCcaaa < 2:1122983/150‑1 (MQ=255) tGACCGTCATAAAACGCTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTAACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGATCGCCGCCCGAACaaaa > 2:570142/1‑150 (MQ=255) gACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACaaaaa > 1:179763/1‑150 (MQ=255) aCCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAAAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAAc < 2:705512/150‑1 (MQ=255) tCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCa > 1:454011/1‑150 (MQ=255) cATAAAACGGTGTGTTGCCCGCGGTGAAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTCCCGCCTATTTAATCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCaa < 1:569993/150‑1 (MQ=255) aTAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAg < 2:150046/150‑1 (MQ=255) aTAAAACGGTGTATTGCAAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTCTGTGTTGTTGTGCCGCGGAGATGGAGCGCCGCCCAAACAAAAACCTCaaa > 1:346095/1‑149 (MQ=255) tAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAgg < 1:589597/150‑1 (MQ=255) tAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAgg > 1:1083902/1‑150 (MQ=255) gCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAg > 2:359206/1‑135 (MQ=255) gCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAg < 1:359206/135‑1 (MQ=255) cAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAAAACACCCGccaa > 1:326068/1‑148 (MQ=255) gCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAAc > 1:167020/1‑150 (MQ=255) gCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAAc < 2:750922/150‑1 (MQ=255) gaccaggcggaggattgatgtttgggctgggtgttcgccttgggggTTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAACGCAAc > 2:188543‑M1/47‑150 (MQ=255) tAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGcgccg > 1:675219/1‑106 (MQ=255) tAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGcgccg < 2:675219/106‑1 (MQ=255) tAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAacac > 2:787866/1‑133 (MQ=255) tAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAacac < 1:787866/133‑1 (MQ=255) accaggcggaggattgatgtttgggctgggtgttcgccttgggggTTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAACGCAAcc > 1:969309‑M1/46‑150 (MQ=255) cGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGga < 2:275788/84‑1 (MQ=255) cGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGga > 1:275788/1‑84 (MQ=255) gCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAACGCAACCCCCAAGGCGAaca < 2:167020/150‑1 (MQ=255) ggggTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCaa > 1:489756/1‑150 (MQ=255) gtttgACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAAtc < 1:288999/150‑1 (MQ=255) ggATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTgg < 2:489756/150‑1 (MQ=255) gATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGt > 2:840664/1‑150 (MQ=255) aTTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTc < 2:764946/150‑1 (MQ=255) | GGGTTTGCCCCTGCTGATCGGGGGCTCGGGATACGTGGGCGGCCTGGGGCATCGTGCTCTCTCGCGTGGCTGACCGTCATAAAACGGTGTGTTGCCAGCGGTGTAGCAATAGCCGTGCCGGAGATGGGGGTTTGGGTTTGACGTAGGATTGCGTTAAGACCGAGAAGGGTTCGCCGTGAGTTTTGTTGTGCCGCGGAGATCGAGCGCCGCCCAAACAAAAACCTCAAGGCGAACAC‑CCCGCCCAAACGCAACCCCCAAGGCGAACACCCAGCCCAAACATCAATCCTCCGCCTGGTC > NC_002947/4963648‑4963944 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |