New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5168706 =	65 (1.500)	4 (0.100)	4/244	NT	6.9%	coding (276/1365 nt)	PP_4547	glutamine synthetase
	?	NC_002947	5168744 =	45 (1.080)					coding (314/1365 nt)	PP_4547	glutamine synthetase

CTCGCAGGCCATCACCGGGTGATAACCATCGGCCTTCAACGCTTCGATGGTGCGCAGCAGCACATGGCGTGGGTCCGCGATGCTGGCCGGCAGACCCTCGCTGGGGTGCATGCTCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5168859‑5168706 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTGGAG  >  NC_002947/5168744‑5168865                                                                                                                                                                                                                                                                                      ttttCAGGCCATCACCGGGTGATAACCATCGGCCTTCAACGCTTCGATGGTGCGCAGCAGCACATGGCGTGGGTCCGCGATGCTGGCCGGCAGACCCTCGCTGGGGTGCATGCTCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGG                                                                                                                                >  1:770916/5‑150   CGCAGGCCATCACCGGGTGATAACCATCGGCCTTCAACGCTTCGATGGTGCGCAGCAGCACATGGCGTGGGTCCGCGATGCTGGCCGGCAGACCCTCGCTGGGGTGCATGCTCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCA                                                                                                                              <  1:266375/150‑1    GCAGGCCATCACCGGGTGATAACCATCGGCCTTCAACGCTTCGATGGTGCGCAGCAGCACATGGCGTGGGTCCGCGATGCTGGCCGGCAGACCCTCGCTGGGGTGCATGCTCACCTGCACTTCGGCGGTGGGCACCCGGCGCCAGGGCAG                                                                                                                             >  1:609374/1‑150    GCAGGCCATCACCGGGTGATAACCATCGGCCTTCAACGCTTCGATGGTGCGCAGCAGCACATGGCGTGGGTCCGCGATGCTGGCCGGCAGACCCTCGCTGGGGTGCATGCTCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAG                                                                                                                             >  1:471346/1‑150    GCAGGCCATCACCGGGTGATAACCATCGGCCTTCAACGCTTCGATGGTGCGCAGCAGCACATGGCGTGGGTCCGCGATGCTGGCCGGCAGACCCTCGCTGGGGTGCATGCTCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAG                                                                                                                             >  2:660347/1‑150                                                          CAGCACATGGCGTGGGTCCGCGATGCTGGCCGGCAGACCCTCGCTGGGGTGCATGCTCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAG                                                                                                                             >  1:234274/1‑96                                                          CAGCACATGGCGTGGGTCCGCGATGCTGGCCGGCAGACCCTCGCTGGGGTGCATGCTCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAG                                                                                                                             <  2:234274/96‑1                                                                                                                     CCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTG            >  1:1111385/1‑150                                                                                                                       TGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATG                                  <  1:650544/126‑1                                                                                                                       TGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATG                                  >  2:650544/1‑126                                                                                                                               GGCGGTGGGCACCCGGCGCCAGGGCAGGTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTGGAG  <  2:1111385/150‑1                                                                                                                                                                                                                                                                                      CTCGCAGGCCATCACCGGGTGATAACCATCGGCCTTCAACGCTTCGATGGTGCGCAGCAGCACATGGCGTGGGTCCGCGATGCTGGCCGGCAGACCCTCGCTGGGGTGCATGCTCACCTGCACTGCGGCGGTGGGCACCCGGCGCCAGGGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5168859‑5168706 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggTGAGCATGCACCCCAGCGAGGGTCTGCCGGCCAGCATCGCGGACCCACGCCATGTGCTGCTGCGCACCATCGAAGCGTTGAAGGCCGATGGTTATCACCCGGTGATGGCCTGCGAGCTGGAG  >  NC_002947/5168744‑5168865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.