New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5601914	46 (1.060)	3 (0.070)	3/242	NT	6.0%	coding (1619/5418 nt)	PP_4924	subtilase family serine protease
	?	NC_002947	= 5601962	50 (1.210)					coding (1571/5418 nt)	PP_4924	subtilase family serine protease

GTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCGAGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATGTAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5601818‑5601914 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcccAGGAGGGTGGCACTCTACTGACTTCGTCAAGCGGGCCCACTTCCCGAAGGGCCTACATCAGCCAGAGTGCTCAAGGCAGCACGCTGGACGCCGCAGCGCTCGGCGTACAGACGCTTTACGGCAGCGCGGGCGATGATGTCTTGACCGCG  <  NC_002947/5601962‑5601814                                                                                                                                                                                                                                                        GTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCGAGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATGTAGGCCCAGGAGGGTGGCACTCTACTGACTTCGTCAAGCGGGCCCACTTCCCGAAGGGCC                                                                                                  <  2:625910/150‑1                                       TACGCCGAGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATGTAGGCCCAGGAGGGTGGCACTCTACTGACTTCGTCAAGCGGGCCCACTTCCCGAAGGGCCTACATCA                                                                                           >  1:650663/1‑119                                       TACGCCGAGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATGTAGGCCCAGGAGGGTGGCACTCTACTGACTTCGTCAAGCGGGCCCACTTCCCGAAGGGCCTACATCA                                                                                           <  2:650663/119‑1                                                                                              GCCCAGGAGGGTGGCACTCTACTGACTTCGTCAAGCGGGCCCACTTCCCGAAGGGCCTACATCAG                                                                                          <  1:987209/65‑1                                                                                              GCCCAGGAGGGTGGCACTCTACTGACTTCGTCAAGCGGGCCCACTTCCCGAAGGGCCTACATCAG                                                                                          >  2:987209/1‑65                                                                                                 CAGGAGGGTGGCACTCTACTGACTTCGTCAAGCGGGCCCACTTCCCGAAGGGCCTACATCAGCCAGAGTGCTCAAGGCAGCACGCTGGACGCCGCAGCGCTCGGCGTACAGACGCTTTACGGCAGCGCGGGCGATGATGTCTTGACCGCG  >  1:822255/1‑150                                                                                                                                                                                                                                                        GTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCGAGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATGTAGGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5601818‑5601914 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcccAGGAGGGTGGCACTCTACTGACTTCGTCAAGCGGGCCCACTTCCCGAAGGGCCTACATCAGCCAGAGTGCTCAAGGCAGCACGCTGGACGCCGCAGCGCTCGGCGTACAGACGCTTTACGGCAGCGCGGGCGATGATGTCTTGACCGCG  <  NC_002947/5601962‑5601814

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.