New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5601914	46 (1.060)	3 (0.070)	3/242	NT	6.0%	coding (1619/5418 nt)	PP_4924	subtilase family serine protease
	?	NC_002947	= 5601962	50 (1.210)					coding (1571/5418 nt)	PP_4924	subtilase family serine protease

CGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCTCTCCTACCGGCTCGACCTGGCCGAGC  >  NC_002947/5601814‑5602105                                                                                                                                                       |                                                                                                                                                cgcgGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTg                                                                                                                                                >  1:822255‑M2/1‑149 (MQ=255)                     ccGCGCTGCCGTAAAGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGa                                                                                                                            <  1:195238/150‑1 (MQ=255)                      cgcgCTGCCGTAAAGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGAc                                                                                                                           <  2:825653/150‑1 (MQ=255)                      cgcgCTGCCGTAAAGAGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGAc                                                                                                                           <  1:162662/150‑1 (MQ=255)                               gTAAAGCGTCTGTACGCCG‑AGAGCTGCGAGGTCGAGCGTGCTGGCTGAAGCACTCTGGCTGATG‑TAGGCCCTTCTGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCCCCTGGGCCACGATCAGATTACCGACAGTATCgcc                                                                                                                  >  2:491711/1‑148 (MQ=255)                                 aaaGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCga                                                                                                                <  1:1053734/150‑1 (MQ=255)                                 aaaGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCCTGCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCga                                                                                                                <  1:851417/150‑1 (MQ=255)                                       tCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGAtt                                                                                                                                 <  1:475357/127‑1 (MQ=255)                                       tCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGAtt                                                                                                                                 >  2:475357/1‑127 (MQ=255)                                         tggaCGCCGCAGCGCT‑CGGCGTACAGCGTGCTGCCTTGAGCACTCTGGCT‑ATGCCAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTc                                                                                                        >  1:630559/4‑150 (MQ=255)                                           tACGCCG‑AGCCCTGCGGCGCCCAGCGTGCTGCCTTTAGCACTCTGTCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCCCCCTCCTCGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCAc                                                                                                      <  2:287032/150‑1 (MQ=255)                                               ccG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGcc                                                                                                  >  2:113241/1‑150 (MQ=255)                                                            gcgTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCgg                                                                                      >  2:497740/1‑150 (MQ=255)                                                              gTCCAGCGTGCTGGCTTGAGCACGCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTc                                                                                    <  2:296911/150‑1 (MQ=255)                                                              gTCCAGCGTCCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTc                                                                                    <  1:425412/150‑1 (MQ=255)                                                                 cAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTc                                                                                 >  2:992460/1‑150 (MQ=255)                                                                    cGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCAcc                                                                              <  2:93840/150‑1 (MQ=255)                                                                     gTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCa                                                                             <  1:66705/150‑1 (MQ=255)                                                                           ccTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACa                                                                       >  1:957176/1‑150 (MQ=255)                                                                           ccTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACa                                                                       <  2:957176/150‑1 (MQ=255)                                                                             ttGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGt                                                                     >  2:756757/1‑150 (MQ=255)                                                                             ttGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGt                                                                     <  2:391259/150‑1 (MQ=255)                                                                                    ctctGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCt                                                                                  >  1:776804/1‑130 (MQ=255)                                                                                    ctctGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCt                                                                                  <  2:776804/130‑1 (MQ=255)                                                                                     tctGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAgc                                                               <  2:606184/148‑1 (MQ=255)                                                                                     tctGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAgc                                                               >  1:606184/1‑148 (MQ=255)                                                                                          cTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTgggc                                                                                                                                             >  2:987209‑M2/1‑61 (MQ=255)                                                                                          cTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTgggc                                                                                                                                             <  1:987209‑M2/65‑5 (MQ=255)                                                                                           tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTgggcctacatcagccagagtgctcaaggcagcacgctggacgccgcagcgctcggcgta                                                                                      >  1:650663‑M2/1‑60 (MQ=255)                                                                                           tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTgggcctacatcagccagagtgctcaaggcagcacgctggacgccgcagcgctcggcgta                                                                                      <  2:650663‑M2/119‑60 (MQ=255)                                                                                           tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTc                                                                                    <  2:566530/121‑1 (MQ=255)                                                                                           tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTc                                                                                    >  1:566530/1‑121 (MQ=255)                                                                                           tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCggg                                                       >  2:1048555/1‑150 (MQ=255)                                                                                           tGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGGGCGACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCggg                                                       >  2:156949/1‑150 (MQ=255)                                                                                                   ggCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTgggcctacatcagccagagtgctcaaggcagcacgctggacgccgcagcgctcggcgtacagacgctttacggcagcgcgggcgatgatgtcttgac                                                <  2:625910‑M2/150‑98 (MQ=255)                                                                                                    gCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCgg                                                        >  2:361398/1‑141 (MQ=255)                                                                                                    gCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCgg                                                        <  1:361398/141‑1 (MQ=255)                                                                                                    gCCCTTCGGGAAGTGGGCCCCCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGAcc                                               <  2:149906/150‑1 (MQ=255)                                                                                                     cccTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCt                                              <  1:884678/150‑1 (MQ=255)                                                                                                       cTTCGGGAATTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCg                                            >  1:811585/1‑150 (MQ=255)                                                                                                       cTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTcc                                                                                         <  1:730741/105‑1 (MQ=255)                                                                                                       cTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTcc                                                                                         >  2:730741/1‑105 (MQ=255)                                                                                                         tCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAAACTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGtt                                          <  1:491711/150‑1 (MQ=255)                                                                                                             gAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTAccc                                      <  1:802254/150‑1 (MQ=255)                                                                                                                gTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGa                                   <  1:497740/150‑1 (MQ=255)                                                                                                                 tGGGCCCGTTTGACGAAGGCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGAc                                  <  2:377669/150‑1 (MQ=255)                                                                                                                          ttGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCtctc                         <  2:811585/150‑1 (MQ=255)                                                                                                                               gAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTAc                                        <  1:985899/130‑1 (MQ=255)                                                                                                                               gAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTAc                                        >  2:985899/1‑130 (MQ=255)                                                                                                                               gAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACctct                          <  2:164237/144‑1 (MQ=255)                                                                                                                               gAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACctct                          >  1:164237/1‑144 (MQ=255)                                                                                                                                     aGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACGGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCTCTCCTACCGGCTCg              >  1:183068/1‑150 (MQ=255)                                                                                                                                        agagTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCTCTCCTACCGGCTCGAcc           <  1:931500/150‑1 (MQ=255)                                                                                                                                         gagTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCa                                                                                                 <  2:920761/63‑1 (MQ=255)                                                                                                                                         gagTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCa                                                                                                 >  1:920761/1‑63 (MQ=255)                                                                                                                                                 cccTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCTCTCCTACCGGCTCGACCTGGCCGAGc  <  1:756757/150‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                CGCGGTCAAGACATCATCGCCCGCGCTGCCGTAAAGCGTCTGTACGCCG‑AGCGCTGCGGCGTCCAGCGTGCTGCCTTGAGCACTCTGGCTGATG‑TAGGCCCTTCGGGAAGTGGGCCCGCTTGACGAAGTCAGTAGAGTGCCACCCTCCTGGGCCTCGATCCGATTACCGACGGTATCGGCGAGAAACCTCACCGCCAGTACTTCCCGGTCCTCACCATTAACAGTGAAAGCGCCTCGGGAAATGACCTCGTTACCCTGACGCACCTCTCCTACCGGCTCGACCTGGCCGAGC  >  NC_002947/5601814‑5602105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.