New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5644175 =	33 (0.760)	3 (0.070)	3/246	NT	9.4%	coding (787/1182 nt)	yhiN	FAD/NAD(P)‑binding domain‑containing oxidoreductase
	?	NC_002947	5644213 =	26 (0.620)					coding (825/1182 nt)	yhiN	FAD/NAD(P)‑binding domain‑containing oxidoreductase

TTGGCGCGTTCGGCCTGCATCTGTTGCAGCCAGGAAAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5644215‑5644175 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGCCGAAAAGCTGGCGAACTGGCAG  >  NC_002947/5644213‑5644360                                                                                                                                                                                               TTGGCGCGTTCGGCCTGCATCTGTTGCAGCCAGGAAAGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCG                                         >  1:362796/1‑150     CGCGTTCGGCCTGCATCTGTTGCAGCCAGGAAAGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGG                                                                             <  1:280848/110‑1     CGCGTTCGGCCTGCATCTGTTGCAGCCAGGAAAGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGG                                                                             >  2:280848/1‑110                                        GCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGCAGAAACGCTGGCGAGCTGGCAG  >  2:476202/1‑150                                                                                                                                                                                               TTGGCGCGTTCGGCCTGCATCTGTTGCAGCCAGGAAAGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5644215‑5644175 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgcCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGCCGAAAAGCTGGCGAACTGGCAG  >  NC_002947/5644213‑5644360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.