New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5644175 =	33 (0.760)	3 (0.070)	3/246	NT	9.4%	coding (787/1182 nt)	yhiN	FAD/NAD(P)‑binding domain‑containing oxidoreductase
	?	NC_002947	5644213 =	26 (0.620)					coding (825/1182 nt)	yhiN	FAD/NAD(P)‑binding domain‑containing oxidoreductase

AAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGCCGAAAAGCTGGCGAACTGGCAGGT  >  NC_002947/5644066‑5644362                                                                                                                                                    |                                                                                                                                                      cgccggggtgtactgcttcattggcttcgactcgaaccactgctcggccagcaagttggccagcttgcgggtgaacacctcgcccagcacggtcttcagttcggcgttgGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCaa                                                                                                                                                     >  1:362796‑M1/110‑150 (MQ=255)    ccTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGc                                                                                                                                                  >  2:134058/1‑150 (MQ=255)          gTTCACGCACCGCGGCCTGAGCCGCCCGGCCATCGTGCAGATCTCTTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACt                                                                                                                                            <  2:472682/150‑1 (MQ=255)                gCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGAAGGCCGAACGCGCCAACGCCGAACTGAAGAc                                                                                                                                      >  2:580404/1‑150 (MQ=255)                              gCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAgg                                                                                                                        <  1:842063/150‑1 (MQ=255)                                         aTCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGc                                                                                                             <  1:187864/150‑1 (MQ=255)                                                aGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTgg                                                                                                      >  1:545692/1‑150 (MQ=255)                                                 gATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGc                                                                                                     <  2:257659/150‑1 (MQ=255)                                                   tctcGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCa                                                                                                   >  1:584928/1‑150 (MQ=255)                                                                ggAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGa                                                                                      >  1:1119152/1‑150 (MQ=255)                                                                   aGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGaa                                                                                                                                              >  1:244802/1‑91 (MQ=255)                                                                   aGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGaa                                                                                                                                              <  2:244802/91‑1 (MQ=255)                                                                   aGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGCCCGAACGCGCCAACGCCCAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCTCAAGCTGGCCAACTTGCTGGCCGAGCa                                                                                   <  1:72132/150‑1 (MQ=255)                                                                      cGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTg                                                                                >  1:190325/1‑150 (MQ=255)                                                                        gTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGt                                                                              >  2:886547/1‑150 (MQ=255)                                                                            cacGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGa                                                                          <  2:982686/150‑1 (MQ=255)                                                                             acGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAg                                                                         >  1:393550/1‑150 (MQ=255)                                                                                     gaTCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGcc                                                                 >  2:896097/1‑150 (MQ=255)                                                                                            cTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAg                                                          >  1:382488/1‑150 (MQ=255)                                                                                               ttGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAg                                                       <  2:502183/150‑1 (MQ=255)                                                                                                  cccGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTac                                                    >  2:1024272/1‑150 (MQ=255)                                                                                                           ttggcgcgttcggcctgcatctgttgcagccaggaaagcgcCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCcggcg                                           >  1:362796‑M2/42‑150 (MQ=255)                                                                                                               cgcgttcggcctgcatctgttgcagccaggaaagcgcCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTgg                                                                               <  1:280848‑M2/73‑1 (MQ=255)                                                                                                               cgcgttcggcctgcatctgttgcagccaggaaagcgcCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTgg                                                                               >  2:280848‑M2/38‑110 (MQ=255)                                                                                                                   ttCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGgc                                   <  1:886547/150‑1 (MQ=255)                                                                                                                   ttCCTGACTGAAACAGATGCAGGCAGAACGCGCCAACGCCGAACTGAAGACCTTGCTGGGCGAGGTGACCACACGCCAGATGGATGCCTGGCTGCGAGGGCAGTGGGTGTGATCGTAGCCGAGGTAGCGGCGCACCCCGGCGGAACTGgc                                   <  2:11432/150‑1 (MQ=255)                                                                                                                        ggCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCaaa                              >  1:691169/1‑150 (MQ=255)                                                                                                                             cAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGcc                         <  2:60923/150‑1 (MQ=255)                                                                                                                             cAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGcc                         <  1:134058/150‑1 (MQ=255)                                                                                                                                       aGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGCCGAAAAGCTgg               <  2:382488/150‑1 (MQ=255)                                                                                                                                           cGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGCCGAAAAGCTGGCGaa           >  1:790633/1‑150 (MQ=255)                                                                                                                                            gAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGc                          <  2:716474/134‑1 (MQ=255)                                                                                                                                            gAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGc                          >  1:716474/1‑134 (MQ=255)                                                                                                                                                  gcCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGCAGAAACGCTGGCGAGCTGGCAg    >  2:476202‑M2/3‑150 (MQ=255)                                                                                                                                                    cAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCACTGGTTCGAGTCGAAGCCAATGAAGCAGTACGCCCCGGCGGAACTGGCGCAAATCGCCGAAAAGCTGGCGAACTGGCAGgt  >  2:572015/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      AAACCTGCTGTTCACGCACCGCGGCCTGAGCGGCCCGGCAATCTTGCAGATCTCGTCGTTCTGGGAAGCCGGTGACACGGTCGAGATCAACCTGTTGCCCGACCGCGATGCGCTTTCCTGGCTGCAACAGATGCAGGCCGAACGCGCCAACGCCGAACTGAAGACCGTGCTGGGCGAGGTGTTCACCCGCAAGCTGGCCAACTTGCTGGCCGAGCAGTGGTTCGAGTCGAAGCCAATGAAGCAGTACACCCCGGCGGAACTGGCGCAAATCGCCGAAAAGCTGGCGAACTGGCAGGT  >  NC_002947/5644066‑5644362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.