| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5646682 = | 57 (1.320) | 3 (0.070) | 3/246 | NT | 5.7% | coding (1984/2184 nt) | PP_4954 | membrane protein |
| ? | NC_002947 | 5646714 = | 45 (1.070) | coding (2016/2184 nt) | PP_4954 | membrane protein | |||||
TGGCCCCAGCTGCCGGCATATCAACGCCAGCTGCGTCTGCACCAACCGCTGATGCTCATCCAGATCTTCCGGCATCTGCTCCAGGGCATTGGCCAACGCCTCTTCGGAATCACTGTGAATCGCCACCGGC‑‑AGCCGCGCGGCCAGGCCGTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5646834‑5646682‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTG > NC_002947/5646714‑5646792 gcGCCCCAGGTGCCGGCATATCAACGCCAGCTGCGTCTGCACCAACCGCTGATGCTCATCCAGATCTTCCGGCATCTGCTCCAGGGCATTGGCCAACGCCTCTTCGGAATCACTGTGAATCGCCACCGGC‑‑AGCCGCGCGGCCAGGCCGTT < 2:965449/148‑1 GGCCCCAGCTGCCGGCATATCAACGCCAGCTGCGTCTGCACCAACCGCTGATGCTCATCCAGATCTTCCGGCATCTGCTCCAGGGCATTGGCCAACGCCTCTTCGGAATCACTGTGAATCGCCACCGGC‑‑AGCCGCGCGGCCAGGCCGTTG < 1:495909/150‑1 GCCCCAGCTGCCGGCATATCAACGCCAGCTGCGTCTGCACCAACCGCTGATGCTCATCCAGATCTTCCGGCATCTGCTCCAGGGCATTGGCCAACGCCTCTTCGGAATCACTGTGAATCGCCACCGGC‑‑AGCCGCGCGGCCAGGCCGTTGG < 2:1111108/150‑1 TATCAACGCCAGCTGCGTCTGCACCAACCGCTGATGCTCATCCAGATCTTCCGGCATCTGCTCCAGGGCATTGGCCAACGCCTCTTCGGAATCACTGTGAATCGCCAACGGCCTGGCCGCGCGGC‑‑TGCCGGTGGCGATTCACAGTGATTC < 2:888527/150‑1 ATCGCCACCGGC‑‑AGCCGCGCGGCCAGGCCGTTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGAT > 1:555263/1‑99 ATCGCCACCGGC‑‑AGCCGCGCGGCCAGGCCGTTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGAT < 2:555263/99‑1 CGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTgg > 1:247341/1‑78 CGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTG < 2:247341/80‑1 TGGCCCCAGCTGCCGGCATATCAACGCCAGCTGCGTCTGCACCAACCGCTGATGCTCATCCAGATCTTCCGGCATCTGCTCCAGGGCATTGGCCAACGCCTCTTCGGAATCACTGTGAATCGCCACCGGC‑‑AGCCGCGCGGCCAGGCCGTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5646834‑5646682‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTG > NC_002947/5646714‑5646792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |