New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5646682 = | 57 (1.320) | 3 (0.070) | 3/246 | NT | 5.7% | coding (1984/2184 nt) | PP_4954 | membrane protein |
? | NC_002947 | 5646714 = | 45 (1.070) | coding (2016/2184 nt) | PP_4954 | membrane protein |
CTCAGCTACCTCTCGGGGTTAGGCGCGCACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGCCGGCAGCTGGGGCCACTGCGGAC > NC_002947/5646568‑5646842 | cTCAGCTACCTCTCGGGGTTAGGCGCGCACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGAtt < 2:358178/150‑1 (MQ=255) aGCTACCTCTCGGGGTTAGGCGCGCACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTcac > 2:843707/1‑150 (MQ=255) tACCTCTCGGGGTTAGGCGCGCACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGt < 2:817014/150‑1 (MQ=255) ccTCTCGGGGTTAGGCGCGCACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGTCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGa < 2:1003481/150‑1 (MQ=255) ccTCTCGGGGTTAGGCGCGCACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGa < 2:1003415/150‑1 (MQ=255) tatcaacgccagctgcgtctgcaccaaccgctgatgctcatccagatcttccggcatctgctccagggcattggccaacgcctcttcggaatcactgtgaatcgccaacggcctggccgcgcggctgccggtggcGATTCACAGTGATTc < 2:888527‑M2/15‑1 (MQ=255) gggTTAGGCGCGCACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGaa > 1:410666/1‑150 (MQ=255) ttAGGCGCGCACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAagag < 2:1066599/150‑1 (MQ=255) ttAGGCGCGCACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAagag > 2:688387/1‑150 (MQ=255) gcACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAAGGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGc < 2:499737/150‑1 (MQ=255) cgcgACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCNAAt < 2:703517/150‑1 (MQ=255) cgcgACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAAt > 2:190138/1‑150 (MQ=255) acGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTg < 1:268511/150‑1 (MQ=255) gTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCa < 1:1069708/150‑1 (MQ=255) gTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCa < 1:659998/150‑1 (MQ=255) gTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCa < 1:659577/150‑1 (MQ=255) aaGCCGAGGTGCAGGAGCAGTTTATCGAAGACGCCGGGCAAAGGCTGGCCAGCTGCCTGGTTGAAATTGCCAACGGCCTTGTTGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGc < 1:459750/149‑1 (MQ=255) aGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGcc < 2:671163/150‑1 (MQ=255) atccagatcttccggcatctgctccagggcattggccaacgcctcttcggaatcactgtgaatcGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGAt < 2:555263‑M1/35‑1 (MQ=255) atccagatcttccggcatctgctccagggcattggccaacgcctcttcggaatcactgtgaatcGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGAt > 1:555263‑M1/65‑99 (MQ=255) gAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGaa < 2:867376/150‑1 (MQ=255) gAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGaa < 2:410666/150‑1 (MQ=255) ggTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTcac < 2:633281/100‑1 (MQ=255) ggTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTcac > 1:633281/1‑100 (MQ=255) gTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGAt < 2:745673/150‑1 (MQ=255) aGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGCCAAAATTCCAAACGCCCTGCCCCGGCGCCT‑‑GCCGGGGCGGATTCACAGTGTTTCCGAAGAGGCGTTGGCCAATGCCCGGGACCTGATGCCGAAAAATCTgg > 2:1080450/1‑150 (MQ=255) gCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGTAAGATCTGGATGa > 2:57789/1‑150 (MQ=255) aGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGc < 1:190138/150‑1 (MQ=255) aaGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGt > 1:395074/1‑150 (MQ=255) cgcCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCACTGCCCTGGACCCGACGCCGGAAGATCTGGATGAGCATCAGCGGTTGGt < 1:573477/150‑1 (MQ=255) gcCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCGGCGCGGCT‑‑TCTGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTg < 1:807018/150‑1 (MQ=255) gcCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGACAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTg < 1:631483/150‑1 (MQ=255) cGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCa < 1:1082589/150‑1 (MQ=255) gggCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTcc > 1:398251/1‑81 (MQ=255) gggCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTcc < 2:398251/81‑1 (MQ=255) gggCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAg > 2:14852/1‑150 (MQ=255) gCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACCGTATTTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGAc < 1:688387/150‑1 (MQ=255) ccTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGATGGTGCAGACGCAGCt > 2:568151/1‑150 (MQ=255) cTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTg > 1:125224/1‑150 (MQ=255) ccAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACCGTGATTCCGAAGGGGAGTTTGCCAGGGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGt > 1:979836/1‑150 (MQ=255) cagcagCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGtt < 1:495032/150‑1 (MQ=255) gaatcactgtgaatcGCCACCGGCA‑‑GCCGCGCGGCCAGGCCGTTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGata < 2:888527‑M1/135‑1 (MQ=255) cTGGACGAAATTGCCAACGGCCTGCCCGCGCGCCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAACAGGCGTTGGCCAATCCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGc > 2:507634/1‑150 (MQ=255) tGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGtt < 1:83886/142‑1 (MQ=255) tGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGtt > 2:83886/1‑142 (MQ=255) gAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGCCGGCAg > 1:636022/1‑150 (MQ=255) atcgccaccggcagccgcgcggccaggccgttggcGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGAt < 2:555263‑M2/64‑1 (MQ=255) atcgccaccggcagccgcgcggccaggccgttggcGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGAt > 1:555263‑M2/36‑99 (MQ=255) CCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGCCGGCAGCTGGGGc < 2:1111108‑M1/150‑1 (MQ=255) CAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGCCGGCAGCTGGGGcc < 1:495909‑M1/150‑1 (MQ=255) AACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGCCGGCACCTGGggcgc < 2:965449‑M1/150‑3 (MQ=255) gCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGCCGGCAGCTGGGGCCACTGc < 1:1111108/150‑1 (MQ=255) cTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGCCGGCAGCTGGGGCCACTGCgg > 1:232198/1‑150 (MQ=255) ggCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGCCGGCAGCTGGGGCCACTGCGGAc < 1:413316/150‑1 (MQ=255) ggCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGCCGGCAGCTGGGGCCACTGCGGAc < 2:125224/150‑1 (MQ=255) gTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGcc < 1:574803/112‑1 (MQ=255) gTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGcc > 2:574803/1‑112 (MQ=255) cGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCggtgg > 1:247341‑M2/2‑78 (MQ=255) cGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTg < 2:247341‑M2/79‑1 (MQ=255) | CTCAGCTACCTCTCGGGGTTAGGCGCGCACCGCGACACGGCGTTGCCAGCCGAGGTGCAGGAGCAGTTGATCGAAGGCGCCGGGCAAAGCCTGGCCAGCAGCCTGGACGAAATTGCCAACGGCCTGGCCGCGCGGCT‑‑GCCGGTGGCGATTCACAGTGATTCCGAAGAGGCGTTGGCCAATGCCCTGGAGCAGATGCCGGAAGATCTGGATGAGCATCAGCGGTTGGTGCAGACGCAGCTGGCGTTGATATGCCGGCAGCTGGGGCCACTGCGGAC > NC_002947/5646568‑5646842 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |