New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5706735 =	44 (1.020)	3 (0.070)	3/244	NT	6.4%	coding (697/4761 nt)	PP_5009	hypothetical protein
	?	NC_002947	5706777 =	45 (1.080)					coding (739/4761 nt)	PP_5009	hypothetical protein

CTGTCCGATCACCGGTCTGTGCGCCCAGGACAACGCCTCGAAGCGATAGCGTTGCGCTAGCTGCCGTTGCAGCGCAGTGGCAAAGCTGGGCAGGTCGACATGGCGACGAACCGAACCGCAGGGCTTGCATTGCAGAACCAGGTTGCGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5706884‑5706735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCC  >  NC_002947/5706777‑5706886                                                                                                                                                                                                                                                                      CTGTCCGATCACCGGTCTGTGCGCCCAGGACAACGCCTCGAAGCGATAGCGTTGCGCTAGCTGCCGTTGCAGCGCAGTGGCAAAGCTGGGCAGGTCGACATGGCGACGAACCGAACCGCAGGGCTTGCATTGCAGAACCAGGTTGCGGTT                                                                                                                <  2:388760/150‑1                                                                                                               CCGAACCGCAGGGCTTGCATTGCAGAACCAGGTTGCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCC  >  2:437873/1‑150                                                                                                                 GAACCGCAGGGCTTGCATTGCAGAACCAGGTTGCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGAT           >  1:666093/1‑139                                                                                                                 GAACCGCAGGGCTTGCATTGCAGAACCAGGTTGCGGTTCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGAT           <  2:666093/139‑1                                                                                                                                                                                                                                                                      CTGTCCGATCACCGGTCTGTGCGCCCAGGACAACGCCTCGAAGCGATAGCGTTGCGCTAGCTGCCGTTGCAGCGCAGTGGCAAAGCTGGGCAGGTCGACATGGCGACGAACCGAACCGCAGGGCTTGCATTGCAGAACCAGGTTGCGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5706884‑5706735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttCGTCGCCATGTCGACCTGCCCAGCTTTGCCACTGCGCTGCAACGGCAGCTAGCGCAACGCTATCGCTTCGAGGCGTTGTCCTGGGCGCACAGACCGGTGATCGGACAGCC  >  NC_002947/5706777‑5706886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.