New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5756714 =	58 (1.340)	4 (0.100)	4/236	NT	6.8%	intergenic (+335/‑353)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
	?	NC_002947	5756788 =	56 (1.390)					intergenic (+409/‑279)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase

ACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5756871‑5756714 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaaGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAG  >  NC_002947/5756788‑5756935                                                                                                                                                                                                                                                                                                                    ACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGNTTA                                                                                                                                                              <  2:696557/150‑1        AAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGA                                                                                                                                                       >  1:553405/1‑150                                                                                  CTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGCCAGCTGGCCAATCTCCACCTGCCGTTCCGCGTTGGCACCCCCACCGTATTCTCGGGTAAACCC                                                                             >  1:976076/1‑150                                                                                                  CCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCC                                                                                                                     <  1:522019/94‑1                                                                                                  CCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCC                                                                                                                     >  2:522019/1‑94                                                                                                      TCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGA                                                         >  1:721099/1‑150                                                                                                                                                      ACCCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGG                                                                                     <  2:347842/74‑1                                                                                                                                                        CCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTA                                                                 <  1:423048/92‑1                                                                                                                                                        CCGCGAAGAGGCCGCGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTA                                                                 >  2:423048/1‑92                                                                                                                                                             AAGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATACCTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAG  <  2:999965/150‑1                                                                                                                                                                                                                                                                                                                    ACCATACAAGCGGGTTTACCCGCGAATACGGTGGTGGCGGCAACGCTGAACGGCAGGTGGAGATTGGCCAGCAGGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACGACGACCGCGATGTGTGTCCACGCCGTGGTAGGAGCGGGTTTACCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5756871‑5756714 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acccgcgaaGAGGCCGGGCCTGCTGGCCAATCTCCACCTGCCGTTCAGCGTTGCCGCCACCACCGTATTCGCGGGTAAACCCGCTTGTATGGTAGGACTTGAAGGGAGGAGGAGGGCCATAACTCGCTTCTGACTGTTCGCGCAGTACAGACCGTAG  >  NC_002947/5756788‑5756935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.