| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 395980 | 32 (0.740) | 8 (0.200) | 8/236 | NT | 19.8% | intergenic (+159/+45) | fdhA/PP_0329 | formaldehyde dehydrogenase/hypothetical protein |
| ? | NC_002947 | = 395987 | 35 (0.870) | intergenic (+166/+38) | fdhA/PP_0329 | formaldehyde dehydrogenase/hypothetical protein | |||||
GTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGAACA > NC_002947/395832‑396128 | gTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑g > 1:728497/1‑150 (MQ=255) gagCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAa > 1:360440‑M2/1‑149 (MQ=255) gCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAagg > 2:381139‑M2/1‑147 (MQ=255) ccccTCGCATCGAGGGGCTTCTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAaggg < 1:563758‑M2/150‑5 (MQ=255) ggggCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTc < 2:990676/150‑1 (MQ=255) ggggCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTc > 1:1002222/1‑150 (MQ=255) cTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGt < 1:420185/150‑1 (MQ=255) aTAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTaa > 1:1100398/1‑150 (MQ=255) ccGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATtgtg < 2:903459/150‑1 (MQ=255) ttGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTTCGCTCCAgggccacccaccaggcttcggaa < 2:143949‑M2/113‑24 (MQ=255) ttGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑TC‑GCTCcagggccacccaccaggcttcggaa > 1:143949‑M2/1‑88 (MQ=255) ttGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatga > 1:350892‑M2/1‑89 (MQ=255) ttGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatga < 2:350892‑M2/120‑32 (MQ=255) aTAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCAt > 2:683445/1‑150 (MQ=255) tAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAg < 2:737660/80‑1 (MQ=255) tAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAg > 1:737660/1‑80 (MQ=255) aaGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTg > 1:389473/1‑150 (MQ=255) ccTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGttt > 2:254545/1‑150 (MQ=255) ccTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGttt < 2:389473/150‑1 (MQ=255) tCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTtcgctccagggcca > 1:35064‑M1/1‑68 (MQ=255) tCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTtcgctccagggcca < 2:35064‑M1/82‑15 (MQ=255) ttttGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTtcgctccagggccactcacca > 1:560064‑M1/1‑61 (MQ=255) ttttGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCTtcgctccagggccactcacca < 2:560064‑M1/82‑22 (MQ=255) aGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATGGTGGCCGGCGCGTCTCATTGTTTGCGTAGGTTGCCCCgca > 2:974512/1‑148 (MQ=255) cGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTg < 1:229980/150‑1 (MQ=255) gAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTgg > 2:727611/1‑150 (MQ=255) gcgcCGCCCGCACATCCCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTTCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTa < 1:19859/150‑1 (MQ=255) gcgcCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTa < 1:683445/150‑1 (MQ=255) cgcccgcACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGTCCCGAATTGGTAGTTc < 2:1100398/150‑1 (MQ=255) cgcccgcACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTc < 1:1059918/150‑1 (MQ=255) cgcacgcaCATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGAGGGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTc < 1:1060513/150‑1 (MQ=255) gcccgcACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTcc < 2:563758/150‑1 (MQ=255) gcACGTGCCTCATCGGTTCCGAGGCCTGGCGGGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGGCATTTTCATGCAGGCAGTTAATTACTCCGATTGTGGCCGGCGCGTGTCCTTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTgtc < 1:455819/150‑1 (MQ=255) tcatcaGTTCCGAAGCCTGGTGAGTGGCCCTtcgctccagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatgaaaggcttatgacaa < 2:350892‑M1/120‑90 (MQ=255) tcatcaGTTCCGAAGCCTGGTGAGTGGCCCTtcgctccagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatgaaaggcttatgacaa > 1:350892‑M1/1‑31 (MQ=255) atcaGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAgggt > 1:431745/1‑148 (MQ=255) atcaGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGAt < 1:1052417/150‑1 (MQ=255) tcaGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATc > 2:557304/1‑150 (MQ=255) gTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTc > 1:526301/1‑150 (MQ=255) ttCCGAAGCCTGGTGGGTGGCCCggagcgaagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatgaaaggcttatgacaa < 2:143949‑M1/113‑90 (MQ=255) ttCCGAAGCCTGGTGGGTGGCCCTggagcgaagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatgaaaggcttatgacaa > 1:143949‑M1/1‑24 (MQ=255) cGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAg > 2:279424/1‑123 (MQ=255) cGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAg < 1:279424/123‑1 (MQ=255) cGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGt > 2:411327/1‑150 (MQ=255) gAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGAt > 2:19083/1‑141 (MQ=255) gAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGAt < 1:19083/141‑1 (MQ=255) gAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTACCAGGGTGTGCGTCGGTTGCCCCGAAGTGGTAGTTCCTGTCGTCATGAGGATCGTCACGtt > 1:11639/1‑150 (MQ=255) ccTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGtttttt < 1:973314/150‑1 (MQ=255) cTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTg < 1:908847/150‑1 (MQ=255) tGGTGAGTGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaa > 1:560064‑M2/1‑21 (MQ=255) tGGTGAGTGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaa < 2:560064‑M2/82‑62 (MQ=255) tGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTgg < 2:1019977/150‑1 (MQ=255) tGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatga < 2:35064‑M2/82‑69 (MQ=255) tGGCCCT‑GGAGCGAagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatga > 1:35064‑M2/1‑14 (MQ=255) cccTtcgctccagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatgaaaggcttatgacaagcacctccggccgagatgtcttatcagaatggacaagaagcccctcgatgcgagggg < 1:563758‑M1/150‑147 (MQ=255) cccT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGaa < 1:557304/150‑1 (MQ=255) ccTtcgctccagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatgaaaggcttatgacaagcacctccggccgagatgtcttatcagaatggacaaaaagcccctcgatgcgaggggc > 2:381139‑M1/1‑3 (MQ=255) ccT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGAAc > 2:345727/1‑150 (MQ=255) ccT‑GGAGCGAAGGGCCACTGCGCAGTCATTTCCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGAAc > 1:711413/1‑150 (MQ=255) ttcgctccagggccactcaccaggcttcggaactgatgaggtatgtgcgggcggcgctcgacttcaaaagcgatgaaaggcttatgacaagcacctccggccgagatgtcttatcagaatggacaaaaagcccctcgatgcgaggggctc > 1:360440‑M1/1‑1 (MQ=255) | GTAAAAAGAGCCCCTCGCATCGAGGGGCTTTTTGTCCATTCTGATAAGACATCTCGGCCGGAGGTGCTTGTCATAAGCCTTTCATCGCTTTTGAAGTCGAGCGCCGCCCGCACATACCTCATCAGTTCCGAAGCCTGGTGAGTGGCCCT‑GGAGCGAAGGGCCACTGCGCAGTCATTTTCATGCAGACAGTTAATTACTCCGATTGTGGCCGGCGCGTCTCATTGTTTGCGTCGGTTGCCCCGAATTGGTAGTTCCTGTCGTCATGAGGATCGTCACGTTTTTTGGGAGCGTAGAACA > NC_002947/395832‑396128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |