New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	479162 =	43 (0.990)	4 (0.100)	4/244	NT	8.4%	coding (310/1107 nt)	cca	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase
	?	NC_002947	479206 =	46 (1.110)					coding (266/1107 nt)	cca	multifunctional tRNA nucleotidyltransferase/2',3'‑cyclic phosphodiesterase/2' nucleotidase/phosphatase

GCAACCCGGAACCCCAGTGGTGCGTAACGGGCAGCAAAGCGTGCAACGCGCAGCACCCGCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTGCGCGCCAGGGCGTATTCCTCACCGG  >  NC_002947/479014‑479311                                                                                                                                                     |                                                                                                                                                      gCAACCCGGAACCCCAGTGGTGCGTAACGGGCAGCAAAGCGTGCAACGCGCAGCACCCGCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGccc                                                                                                                                                      <  2:378162/150‑1 (MQ=255)             cccAGTGGTGCGTAACGGGCAGCAAAGCGTGCAACGCGCAGCACCCGCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCg                                                                                                                                          <  1:172060/150‑1 (MQ=255)                      gCGTAACGGGCAGCAAAGCGTGCAACGCGCAGCACCCGCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCa                                                                                                                                 <  1:638398/150‑1 (MQ=255)                        gtgttcctgcacccgaaaaccggtgaggaatacgccctggcgcgcaccgagcgcaagagtgggcgaggctacggcgggttcacttttcacgccagccccgacgtaaccctggaagaagacctgatCCGCCTCATCCTCGGCCATCGCAtt                                                                                                                               <  2:774407‑M1/25‑1 (MQ=255)                        gTAACGGGCAGCAAAGCGTGCAACGCGCAGCACCCGCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCAtt                                                                                                                               <  2:948822/150‑1 (MQ=255)                              ggCAGCAAAGCGTGCAACGCGCAGCACCCGCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCACGCCTCATCCTCGGCCATCGCATTGATGGt                                                                                                                         <  1:457309/150‑1 (MQ=255)                                 agcaAAGCGTGCAACGGGCAGCACCCGCAAAGGATGTTCGGAGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAg                                                                                                                      <  2:789799/150‑1 (MQ=255)                                 agcaAAGCGTGCAACGCGCAGCACCCGCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAg                                                                                                                      <  2:929347/150‑1 (MQ=255)                                 agcaAAGCGTGCAACGCGCAGCACCCGCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAg                                                                                                                      <  1:582552/150‑1 (MQ=255)                                 agcaAAGCGGGCAACGCGCAGAAACCGAAAAGGCTCTTCGGCGACTGCCGGGGAACCATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAg                                                                                                                      <  2:789794/150‑1 (MQ=255)                                         aaccggtgaggaatacgccctggcgcgcaccgagcgcaagagtgggcgaggctacggcgggttcacttttcacgccagccccgacgtaaccctggaagaagacctgatc                                                                                                                                                       <  2:650917‑M1/1‑1 (MQ=255)                                         aaccggtgaggaatacgccctggcgcgcaccgagcgcaagagtgggcgaggctacggcgggttcacttttcacgccagccccgacgtaaccctggaagaagacctgatc                                                                                                                                                       >  1:650917‑M1/109‑109 (MQ=255)                                               tgaggaatacgccctggcgcgcaccgagcgcaagagtgggcgaggctacggcgggttcacttttcacgccagccccgacgtaaccctggaagaagacctgatCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCa                                                                                                        >  1:774407‑M1/103‑150 (MQ=255)                                                         ccGCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCttcttc                                                                                              >  1:680905/1‑150 (MQ=255)                                                          cGCAAAGGCTCTTCGGCGACTGCCGGGGCACGATGGCGTAGCAGGCGTTGATCCCGGCCGTCCTTGCCTTGGTAGGCTACGTAGACTGTGCCCGCCTCATCCTCGCCCGTCGCCTTGATGGTGAGGTCGCGGCGGGCCAGGTcttctttc                                                                                             >  2:192848/1‑148 (MQ=255)                                                           gCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATc                                                                                                                                    <  1:23040/110‑1 (MQ=255)                                                           gCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATc                                                                                                                                    >  2:23040/1‑110 (MQ=255)                                                            cAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGGGGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAg                                                                                           >  2:588417/1‑150 (MQ=255)                                                                 gATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGttt                                                                                      >  2:3921/1‑149 (MQ=255)                                                                           cgcaagagtgggcgaggctacggcgggttcacttttcacgccagccccgacgtaaccctggaagaagacctgatCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGt                                                                                                     <  1:508075‑M1/51‑1 (MQ=255)                                                                           cgcaagagtgggcgaggctacggcgggttcacttttcacgccagccccgacgtaaccctggaagaagacctgatCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGt                                                                                                     >  2:508075‑M1/75‑125 (MQ=255)                                                                                ccGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGt                                                                       <  1:676066/150‑1 (MQ=255)                                                                                 cGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTg                                                                      >  1:141588/1‑150 (MQ=255)                                                                                  ggggAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGGCTTCTTGCAGGGTTACGTCGGGGCTGGCGTGa                                                                     >  1:172517/1‑150 (MQ=255)                                                                                     gAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGaaaa                                                                  <  1:1044805/150‑1 (MQ=255)                                                                                          aTGGCGTAGGAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGaa                                                             <  2:424567/150‑1 (MQ=255)                                                                                           tGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCCGGTCTTCTTCCAGGTTTACGTCGGGGCTGGCGTGAAAAGTGAAc                                                            <  2:680905/150‑1 (MQ=255)                                                                                               gTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTcttctt                                                                                               >  2:1037512/1‑111 (MQ=255)                                                                                               gTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTcttctt                                                                                               <  1:1037512/111‑1 (MQ=255)                                                                                                   cAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATgg                                                                                                                          <  2:551241/80‑1 (MQ=255)                                                                                                   cAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATgg                                                                                                                          >  1:551241/1‑80 (MQ=255)                                                                                                    aGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAg                                                   >  2:590229/1‑150 (MQ=255)                                                                                                              ccAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCAc                                         >  2:765982/1‑150 (MQ=255)                                                                                                              ccAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCAc                                         >  2:956593/1‑150 (MQ=255)                                                                                                                 gATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCActct                                      >  2:257196/1‑150 (MQ=255)                                                                                                                  aTCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCtt                                     <  1:926675/150‑1 (MQ=255)                                                                                                                    cGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTgc                                   <  1:956593/150‑1 (MQ=255)                                                                                                                         ttGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCg                              <  2:586127/150‑1 (MQ=255)                                                                                                                         ttGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCg                              <  1:257196/150‑1 (MQ=255)                                                                                                                             cTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAg                                                                 >  2:642558/1‑111 (MQ=255)                                                                                                                             cTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAg                                                                 <  1:642558/111‑1 (MQ=255)                                                                                                                              ttGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTgcg                         >  1:44388/1‑150 (MQ=255)                                                                                                                               tGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTgcgc                        <  1:179902/150‑1 (MQ=255)                                                                                                                                 gTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGACATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTgcgcgc                      >  1:1070503/1‑150 (MQ=255)                                                                                                                                     gggTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTGCGCGCCCgg                  <  1:588417/150‑1 (MQ=255)                                                                                                                                       gTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTGCGCGCCAGGGc                >  1:783190/1‑150 (MQ=255)                                                                                                                                           tAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCTCTCGGTGCGCGCCAGGGCGTAt            <  1:150180/150‑1 (MQ=255)                                                                                                                                           tAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTGCGCGCCAGGGCGTAt            <  2:783190/150‑1 (MQ=255)                                                                                                                                             gACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTGCGCGCCAGGGCGTATTc          <  1:584001/150‑1 (MQ=255)                                                                                                                                               cTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTGCGCGCCAGGGCGTATTCCt        >  1:276634/1‑150 (MQ=255)                                                                                                                                                     CCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGTTCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTGCGCGCCAGGGCGTATTCCTCACCgg  >  1:674229‑M1/1‑150 (MQ=255)                                                                                                                                                     CCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTGCGCGCCAGGGCGTATTCCTCACCgg  <  2:1022040‑M1/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      GCAACCCGGAACCCCAGTGGTGCGTAACGGGCAGCAAAGCGTGCAACGCGCAGCACCCGCAAAGGATCTTCGGCGAATGCCGGGGAAACATGGCGTAGCAGGCGTTGATCCAGATCGTTCTTGCCTTGGTAGGGGTCGTAGACTGTGCCCGCCTCATCCTCGGCCATCGCATTGATGGTGAGGTCGCGGCGGATCAGGTCTTCTTCCAGGGTTACGTCGGGGCTGGCGTGAAAAGTGAACCCGCCGTAGCCTCGCCCACTCTTGCGCTCGGTGCGCGCCAGGGCGTATTCCTCACCGG  >  NC_002947/479014‑479311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.