New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 823176	54 (1.250)	3 (0.080) +GGCACCGGCTCTGCCGGTG	3/216	NT	5.9%	coding (1431/1431 nt)	PP_0708	betaine‑aldehyde dehydrogenase
	?	NC_002947	1456002 =	59 (1.360)					intergenic (+74/+175)	PP_1273/PP_1274	multidrug MFS transporter outer membrane protein/short‑chain dehydrogenase/reductase family oxidoreductase

TGACGAGTCGATGTAGGCATCGGGGGGCAGTCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGAACACCGCCTGCACCGAGTTGATCCACACATGGCCAAC  >  NC_002947/823029‑823325                                                                                                                                                    |                                                                                                                                                      tGACGAGTCGATGTAGGCATCGGGGGGCAGTCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCa                                                                                                                                                     <  2:652282/150‑1 (MQ=255)               aGGCATCGGGGGGCAGTCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCggg                                                                                                                                       >  1:959145/1‑150 (MQ=255)                      ggggggCAGTCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATg                                                                                                                                <  2:959145/150‑1 (MQ=255)                       gggggCAGTCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGc                                                                                                                               <  1:776602/150‑1 (MQ=255)                        tgggCAGTCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCt                                                                                                                              <  2:779992/149‑1 (MQ=255)                           gCAGCCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGa                                                                                                                           <  2:280002/150‑1 (MQ=255)                            cAGTCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGAt                                                                                                                          >  2:602653/1‑150 (MQ=255)                              gTCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCtt                                                                                                                             <  2:382768/145‑1 (MQ=255)                              gTCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCtt                                                                                                                             >  1:382768/1‑145 (MQ=255)                                ccAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGAc                                                                                                                      <  2:1007000/150‑1 (MQ=255)                                 cAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACt                                                                                                                     >  2:171436/1‑150 (MQ=255)                                    cTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGAcatca                                                                                                                  <  1:111966/150‑5 (MQ=255)                                    cTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGAt                                                                                                                  <  2:1089897/150‑1 (MQ=255)                                         aGGAGCGGGGGTGGACACACACCGGAGTTTGGACAGAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGcc                                                                                                             <  2:783802/150‑1 (MQ=255)                                              cGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACaa                                                                                                        <  1:1063596/150‑1 (MQ=255)                                                     ggACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCaa                                                                                                 <  2:1068829/150‑1 (MQ=255)                                                      gACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAg                                                                                                <  1:492380/150‑1 (MQ=255)                                                       acacacacCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGCTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAgg                                                                                               >  1:900301/1‑150 (MQ=255)                                                          cacacCGGAGTTTGGACACTCTCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGccc                                                                                            <  1:335675/150‑1 (MQ=255)                                                           acacCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGcccc                                                                                           >  2:633751/1‑150 (MQ=255)                                                             acCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCTAGACAGCGGGTTACATGCtt                                                                                                                             <  2:1066581/114‑1 (MQ=255)                                                             acCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCTAGACAGCGGGTTACATGCtt                                                                                                                             >  1:1066581/1‑114 (MQ=255)                                                               cGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCt                                                                                       >  1:189466/1‑150 (MQ=255)                                                                ggAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTc                                                                                      >  2:1002059/1‑150 (MQ=255)                                                                             aGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGATAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACg                                                                                   <  1:193725/140‑1 (MQ=255)                                                                             aGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGATAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACg                                                                                   >  2:193725/1‑140 (MQ=255)                                                                             aGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGcc                                                                                                             >  1:758340/1‑114 (MQ=255)                                                                             aGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGcc                                                                                                             <  2:758340/114‑1 (MQ=255)                                                                                 cgcgGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAAcccc                                                                                                    <  1:540970/119‑1 (MQ=255)                                                                                 cGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAAcccc                                                                                                    >  2:540970/1‑119 (MQ=255)                                                                                    tGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCt                                                                  >  2:707392/1‑150 (MQ=255)                                                                                        ggAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGt                                                              >  1:659137/1‑150 (MQ=255)                                                                                        ggAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGt                                                              <  2:522116/150‑1 (MQ=255)                                                                                         gAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAgg                                                                                                               >  2:1090149/1‑100 (MQ=255)                                                                                         gAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAgg                                                                                                               <  1:1090149/100‑1 (MQ=255)                                                                                         gAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTg                                                             >  1:521494/1‑150 (MQ=255)                                                                                           aCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCtt                                                                                                                             <  2:1042729/84‑1 (MQ=255)                                                                                           aCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCtt                                                                                                                             <  2:468480/84‑1 (MQ=255)                                                                                           aCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCtt                                                                                                                             >  1:1042729/1‑84 (MQ=255)                                                                                           aCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCtt                                                                                                                             >  1:468480/1‑84 (MQ=255)                                                                                             gggTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGcccc                                                         <  2:189466/150‑1 (MQ=255)                                                                                                 ttACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCa                                                     <  2:521494/150‑1 (MQ=255)                                                                                                 ttACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCa                                                     <  1:633751/150‑1 (MQ=255)                                                                                                  tACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAg                                                    <  2:373669/150‑1 (MQ=255)                                                                                                        cgAACACCGTCAGAGCCTGTGCCATAACGCCACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCTACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGtt                                              <  2:222079/150‑1 (MQ=255)                                                                                                               cGGCAGAGCAGGTGGCATAAGGTGACCCCTTGCGATATCCGCCCAGCCGGAAGAGGACATTGTGGATAGACTGATAGGCCGACAACCTCCAACTCCCCGGCTCACGGCCCATTCAGATGCCCTTGGTGCCCCCCCAGGACGTCTcgacga                                       >  2:542109/1‑150 (MQ=255)                                                                                                                ggCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGaa                                      >  1:614425/1‑150 (MQ=255)                                                                                                                ggCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGaa                                      >  1:1102871/1‑150 (MQ=255)                                                                                                                        cGGTGCCATAACGCGACCCCTTGCGATATggcaccggctctgccggtgttcgcgggtaaacccgttcctacagcggcctgtgtccaaactccggtgtgtgtcc                                                                             <  1:316680‑M1/103‑75 (MQ=255)                                                                                                                        cGGTGCCATAACGCGACCCCTTGCGATATggcaccggctctgccggtgttcgcgggtaaacccgttcctacagcggcctgtgtccaaactccggtgtgtgtcc                                                                             >  2:316680‑M1/1‑29 (MQ=255)                                                                                                                              cATAACGCGACCCCTTGCGATATggcaccggctctgccggtgttcgcgggtaaacccgttcctacagcggcctgtgtccaaactccgg                                                                                      >  2:505597‑M1/1‑23 (MQ=255)                                                                                                                               aTAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTAACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGAACACCGCCTGCACCGa                       >  1:780405/1‑150 (MQ=255)                                                                                                                                  aCGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGAACACCGCCTGCACCGCGtt                    >  2:58597/1‑150 (MQ=255)                                                                                                                                    gcgACCCCTTGCGATATCAGCCCAGCCAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCTCCCAGGACGTTTCGACGAACACCGCCTGCACCGAGTTGa                  <  2:265292/150‑1 (MQ=255)                                                                                                                                      gACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGAACACCGCCTGCACCGAGTTGATc                >  2:979906/1‑150 (MQ=255)                                                                                                                                        ccccTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGAACACCGCCTGCACCGAGTTGATCca              <  1:171436/150‑1 (MQ=255)                                                                                                                                          ccTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGAACACCGCCTGCACCGAGTTGATCcaca            >  2:809835/1‑150 (MQ=255)                                                                                                                                           cTTGCGAGATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCTACACCCTCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGAACACCGCCTGCACCGAGTTGATCcacac           <  1:185379/150‑1 (MQ=255)                                                                                                                                                    tCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGAACACCGCCTGCACCGAGTTGATCCACACATgagatcg  >  1:966401/1‑144 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TGACGAGTCGATGTAGGCATCGGGGGGCAGTCCAGCTGGTAGGAGCGGGGGTGGACACACACCGGAGTTTGGACACAGGCCGCTGTAGGAACGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATAACGCGACCCCTTGCGATATCAGCCCAGACAGCGGGTTACATGCTTGATCGACTGATAGGCCGACAACCCCCAAGGCCCCAGCTCACGGCCGATCCCGCTGCCCTTGGTGCCCCCCCAGGACGTTTCGACGAACACCGCCTGCACCGAGTTGATCCACACATGGCCAAC  >  NC_002947/823029‑823325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.