New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1332458	38 (0.880)	4 (0.100)	4/236	NT	10.6%	intergenic (+33/‑1223)	PP_1157/PP_1159	acetolactate synthase/membrane protein
	?	NC_002947	= 1332481	32 (0.800)					intergenic (+56/‑1200)	PP_1157/PP_1159	acetolactate synthase/membrane protein

GCACTGCATCAAGACCCCAGGTGTGCACGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCATGACTATTGGTTCAACACACAACCATCCTGCCGATCT  >  NC_002947/1332317‑1332606                                                                                                                                              |                                                                                                                                                      gCACTGCATCAAGACCCCAGGTGTGCACGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTa                                                                                                                                               >  2:1100895/1‑150 (MQ=255)     tGCATCAAGACCCCAGGTGTGCACGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCtacaggatcgtg                                                                                                                                           <  1:384606‑M1/150‑13 (MQ=255)         tCAAGACCCCAGGTGTGCACGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGa                                                                                                                                       >  1:240323/1‑150 (MQ=255)          cAAGACCCCAGGTGTGCACGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAt                                                                                                                                      >  1:126429/1‑150 (MQ=255)                cccAGGTGTGCACGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTa                                                                                                                               <  1:760693/150‑1 (MQ=255)                 ccAGGTGTGCACGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAg                                                                                                                              <  2:1038097‑M2/150‑2 (MQ=255)                 ccAGGTGTGCACGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAg                                                                                                                              >  2:240323‑M2/1‑149 (MQ=255)                          cACGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCa                                                                                                                     <  1:647908/150‑1 (MQ=255)                           aCGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAg                                                                                                                    <  2:584965/150‑1 (MQ=255)                           aCGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAg                                                                                                                    <  2:756613/150‑1 (MQ=255)                            cGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAgg                                                                                                                   >  1:995645/1‑150 (MQ=255)                             gTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGt                                                                                                                  <  1:961104/150‑1 (MQ=255)                                aTCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCt                                                                                                               >  2:123530/1‑150 (MQ=255)                                   gACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACa                                                                                                            <  1:134069/150‑1 (MQ=255)                                      tGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCTACAGG‑ATCGTGTGATACCTGTGggtgccggcttactgcgataag                                                                                                         >  1:116511‑M2/1‑128 (MQ=255)                                               gATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACtt                                                                                                >  2:1040292/1‑150 (MQ=255)                                                aTTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCTACAGG‑ATCGTGTGATACCTGTGggtgccggcttactgcga                                                                                                             <  1:119118‑M2/136‑19 (MQ=255)                                                aTTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCTACAGG‑ATCGTGTGATACCTGTGggtgccggcttactgcga                                                                                                             >  2:119118‑M2/1‑118 (MQ=255)                                                               aCCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAAtt                                                                                >  2:330192/1‑150 (MQ=255)                                                                 cGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGa                                                                              <  1:330192/150‑1 (MQ=255)                                                                 cGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGa                                                                              >  2:485883/1‑150 (MQ=255)                                                                  gCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGAt                                                                             >  2:1010016/1‑150 (MQ=255)                                                                      ccTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCaa                                                                                  <  2:1111006/141‑1 (MQ=255)                                                                      ccTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCaa                                                                                  >  1:1111006/1‑141 (MQ=255)                                                                        tCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTg                                                                                     <  1:872342/136‑1 (MQ=255)                                                                        tCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTg                                                                                     >  2:872342/1‑136 (MQ=255)                                                                           aCAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAg                                                                    <  1:1100895/150‑1 (MQ=255)                                                                            cAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAgg                                                                   <  2:995645/150‑1 (MQ=255)                                                                             aGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACATCACGCATTTAGCGATTGATCATTCTCAGGt                                                                  >  1:335770/1‑150 (MQ=255)                                                                               cGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTc                                                                                               >  1:331763/1‑119 (MQ=255)                                                                               cGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTc                                                                                               <  2:331763/119‑1 (MQ=255)                                                                                 aGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTtctc                                                              <  1:1046015/150‑1 (MQ=255)                                                                                                   tGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAAc                                                                                                     <  2:263313/93‑1 (MQ=255)                                                                                                   tGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAAc                                                                                                     >  1:263313/1‑93 (MQ=255)                                                                                                   tGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACga                                            <  1:123530/150‑1 (MQ=255)                                                                                                         tgtAAGGCCTAACTACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGCT‑CCTGTAGGTGCCCGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCAt                                      <  2:603336/150‑1 (MQ=255)                                                                                                               gCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCATGACTAt                                >  2:835357/1‑150 (MQ=255)                                                                                                               gCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCATGACTAt                                <  2:383057/150‑1 (MQ=255)                                                                                                                 cgttaggccTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCATGACTATTg                              >  2:72591/8‑150 (MQ=255)                                                                                                                 cTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCATGACTATTg                              <  1:1010016/150‑1 (MQ=255)                                                                                                                 cTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCATGACTATTg                              <  1:282798/150‑1 (MQ=255)                                                                                                                         cTTATCGCAGTAAGCCGGCACCcacaggtatcacacgatcctgtaggtgccggcttactgcgataaggtcgttaggccttacaccgccagcgcgcgctcacgcagctcgctgttgaggatgcggtcgttctcgctgtaatcgaccgggca                       >  1:116511‑M1/1‑22 (MQ=255)                                                                                                                         cTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCATGACTATTGGTTCAaca                      >  2:668139/1‑150 (MQ=255)                                                                                                                         cTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCATGACTATTGGTTCAaca                      >  1:601812/1‑150 (MQ=255)                                                                                                                             tCGCAGTAAGCCGGCACCcacaggtatcacacgatcctgtaggtgccggcttactgcgataaggtcgttaggccttacaccgccagcgcgcgctcacgcagctcgctgttgaggatgcggtcgttctcgctgtaat                                 <  1:119118‑M1/136‑119 (MQ=255)                                                                                                                             tCGCAGTAAGCCGGCACCcacaggtatcacacgatcctgtaggtgccggcttactgcgataaggtcgttaggccttacaccgccagcgcgcgctcacgcagctcgctgttgaggatgcggtcgttctcgctgtaat                                 >  2:119118‑M1/1‑18 (MQ=255)                                                                                                                                        cGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCATGACTATTGGTTCAACACACAACCATCCTGcc       >  1:768831/1‑150 (MQ=255)                                                                                                                                              ctacaggatcgtgtgatacctgtgggtgccggcttactgcgataaggtcgttaggccttacaccgccagcgcgcgctcacgcagctcgctgttgaggatgcggtcgttctcgctgtaatcgaccgggcagtcgatcacgtgcacacctgg  >  2:240323‑M1/1‑1 (MQ=255)                                                                                                                                              ctacaggatcgtgtgatacctgtgggtgccggcttactgcgataaggtcgttaggccttacaccgccagcgcgcgctcacgcagctcgctgttgaggatgcggtcgttctcgctgtaatcgaccgggcagtcgatcacgtgcacacctgg  <  2:1038097‑M1/150‑150 (MQ=255)                                                                                                                                              |                                                                                                                                                      GCACTGCATCAAGACCCCAGGTGTGCACGTGATCGACTGCCCGGTCGATTACAGCGAGAACGACCGCATCCTCAACAGCGAGCTGCGTGAGCGCGCGCTGGCGGTGTAAGGCCTAACGACCTTATCGCAGTAAGCCGGCACCCACAGGTATCACACGAT‑CCTGTAGGTGCCGGCAGGTGCTACATAGCAACCACTTCACGCCTCTTGCAATTGATCATTCTCAGGTTCTCTACTCATGGAGAACACGAGATCATGACTATTGGTTCAACACACAACCATCCTGCCGATCT  >  NC_002947/1332317‑1332606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.