New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1578527	22 (0.510)	3 (0.070)	3/244	NT	12.0%	coding (2912/3153 nt)	ttgB	efflux pump membrane protein TtgB
	?	NC_002947	= 1578551	23 (0.550)					coding (2888/3153 nt)	ttgB	efflux pump membrane protein TtgB

GTACCCAGAAGATAGCCAGCACGGTCGCACTGATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGTTCGTGCAGCTCCTTGGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTC  >  NC_002947/1578381‑1578675                                                                                                                                                   |                                                                                                                                                     gTACCCAGAAGATAGCCAGCACGGTCGCACTGATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGgc                                                                                                                                                   >  2:43268/1‑150 (MQ=255)    cccAGAAGATAGCCAGCACGGTCGCACTGATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGTACGCCAGCGAGGTCATGATGATCGGGCGCa                                                                                                                                                >  2:595522/1‑150 (MQ=255)    cccAGAAGATAGCCAGCACGGTCGCACTGATCATGCCGCCGATCACGCCAATACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCa                                                                                                                                                <  2:586524/150‑1 (MQ=255)     ccAGAAGATAGCCAGCACGGTCGCACTGATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGgc                                                                                                                                                   >  1:1017086/1‑146 (MQ=255)     ccAGAAGATAGCCAGCACGGTCGCACTGATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGgc                                                                                                                                                   <  2:1017086/146‑1 (MQ=255)     ccAGAAGATAGCCAGCACGGTCGCACTGATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAg                                                                                                                                               >  2:626952/1‑150 (MQ=255)      cAGAAGATAGCCAGCACGGTCGCACTGATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGa                                                                                                                                              <  1:43268/150‑1 (MQ=255)               gCCAGCACGGTCTCACTGATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGCCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCgg                                                                                                                                     <  2:617210/150‑1 (MQ=255)                              cTGATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGaggcgtgccgcatgcgtctgcgcccgatcatc                                                                                                                      <  1:661038‑M1/150‑33 (MQ=255)                                gATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGc                                                                                                                    >  2:266904/1‑150 (MQ=255)                                 aTCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGTTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTCCCACTGTCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGcg                                                                                                                   >  1:88747/1‑150 (MQ=255)                                      gccgccGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTa                                                                                                              >  2:216629/1‑150 (MQ=255)                                          ccgATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAgg                                                                                                          >  2:964569/1‑150 (MQ=255)                                                  gCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCCTACAGGCTGCGGcc                                                                                                  >  2:236124/1‑150 (MQ=255)                                                      gTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGt                                                                                              <  1:964569/150‑1 (MQ=255)                                                       tACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACAGTACCCCGCACAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGAAGCATGCGGCACGCCTCCATCGCTGCATCGTAGCGGCTGCGGCCTTGtt                                                                                             >  1:446249/1‑150 (MQ=255)                                                             tGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGTTCGTGCa                                                                                       >  1:683903/1‑150 (MQ=255)                                                                     tggctgCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGTTCGTGCAGCTCCTTg                                                                               <  2:683903/150‑1 (MQ=255)                                                                                gccggcgccgCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGTTCGTGCAGCTCCTTGGCGAATTCCAc                                                                    <  1:626952/150‑1 (MQ=255)                                                                                  cggcgccgCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGTTCGTGCAGCTCCTTGGCGAATTCCACGa                                                                  <  2:39596/150‑1 (MQ=255)                                                                                                    tCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGACAGGATGATCGGGCGCAGACGCAGGCGGCACGCCTCGATCGCTGGGTCGTACAGGCTGCGGCCTTGTTCGTGCAGCTCCTTGGCGAATTCCACGATCAGAATGGCGTTTTTcg                                                >  2:489945/1‑150 (MQ=255)                                                                                                       aCGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGaggcgtgccgcat                                                                                                                                         <  1:1000471‑M1/58‑14 (MQ=255)                                                                                                       aCGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGaggcgtgccgcat                                                                                                                                         >  2:1000471‑M1/1‑45 (MQ=255)                                                                                                                       gATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGTTCGTGCAGCTCCTTGGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATggtggt                             <  1:266904/150‑1 (MQ=255)                                                                                                                          gAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGTTCGTGCAGc                                                                                     <  1:955943/91‑1 (MQ=255)                                                                                                                          gAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGTTCGTGCAGc                                                                                     >  2:955943/1‑91 (MQ=255)                                                                                                                                 aGCGAGGTCATGATGATCGGGCGCAGAAGCATGCGGCACGCCTCGAGCGCAGCGTCGTACAGGCTGCGGCCTTGTTCGTGCAGCTCCTTGGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCa                   >  2:291185/1‑150 (MQ=255)                                                                                                                                         cATGATGATCGGGCGCAGACGCATGCGCCACCGATCTGTTGCTTGGTCGTACAGGCTGCGGCCTTGTTCGTGCAGCTCCTTGGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGaa           <  2:88747/150‑1 (MQ=255)                                                                                                                                            gatgatCGGGCGCAGACGCATGCGGCACGCCTcgatcatcatgacctcgctggcgttcatcctgggcgtggtaccgttgaccatcgccagcggcgccggcgccggcagccagcacgccatcggtactggcgtgatcggcggcatgatcag        <  1:661038‑M2/150‑119 (MQ=255)                                                                                                                                                  cGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGTTCGTGCAGCTCCTTGGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACAcgtc  <  1:216629/150‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GTACCCAGAAGATAGCCAGCACGGTCGCACTGATCATGCCGCCGATCACGCCAGTACCGATGGCGTGCTGGCTGCCGGCGCCGGCGCCGCTGGCGATGGTCAACGGTACCACGCCCAGGATGAACGCCAGCGAGGTCATGATGATCGGGCGCAGACGCATGCGGCACGCCTCGATCGCTGCGTCGTACAGGCTGCGGCCTTGTTCGTGCAGCTCCTTGGCGAATTCCACGATCAGAATGGCGTTTTTCGCCGCAAGACCGATGGTGGTCAACAGGCCAACCAGGAAGTACACGTC  >  NC_002947/1578381‑1578675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.