New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2443134	36 (0.830)	4 (0.100)	4/246	NT	10.3%	coding (2229/2610 nt)	topA	DNA topoisomerase I
	?	NC_002947	= 2443155	35 (0.830)					coding (2250/2610 nt)	topA	DNA topoisomerase I

ATCGAAGAAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTCCCCAAGAACC  >  NC_002947/2442994‑2443282                                                                                                                                             |                                                                                                                                                     aTCGAAGAAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTc                                                                                                                                             >  1:1067316/1‑150 (MQ=255)     aagaagGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAaga                                                                                                                                         >  2:677405/1‑150 (MQ=255)      agaagGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAagag                                                                                                                                        <  1:245017/150‑1 (MQ=255)        aagGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCctcgccgctcttgagc                                                                                                                                      >  1:667586‑M1/1‑134 (MQ=255)                   cGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGgcggcg                                                                                                                           <  1:458879/150‑1 (MQ=255)                       tCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCAc                                                                                                                       >  2:441364/1‑150 (MQ=255)                            ggTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCctcgccgctcttgagcagcttgcgggtgttcttgca                                                                                                                  <  2:667586‑M1/150‑37 (MQ=255)                                  gAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGAGCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGGGTCCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGAc                                                                                                            >  1:182721/1‑150 (MQ=255)                                     gggCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGTCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAgctg                                                                                                                                                >  1:758163/1‑111 (MQ=255)                                     gggCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAgctg                                                                                                                                                <  2:758163/111‑1 (MQ=255)                                      ggCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAgg                                                                                                        <  1:677405/150‑1 (MQ=255)                                        ccGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCctcgccgctcttgagcagcttgcgggt                                                                                                                           >  1:946544‑M1/1‑102 (MQ=255)                                        ccGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCctcgccgctcttgagcagcttgcgggt                                                                                                                           <  2:946544‑M1/129‑28 (MQ=255)                                                            gTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTg                                                                                  <  1:441364/150‑1 (MQ=255)                                                               cGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAg                                                                                                         >  1:1016538/1‑124 (MQ=255)                                                               cGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAg                                                                                                         <  2:1016538/124‑1 (MQ=255)                                                                   aGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAg                                                                           <  2:601773/150‑1 (MQ=255)                                                                      gagaTGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGa                                                                                                                                  >  2:190292/1‑92 (MQ=255)                                                                      gagaTGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGa                                                                                                                                  <  1:190292/92‑1 (MQ=255)                                                                        gaTGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTcga                                                                      <  2:85072/150‑1 (MQ=255)                                                                            cAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAgg                                                                          <  1:171177/142‑1 (MQ=255)                                                                            cAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAgg                                                                          >  2:171177/1‑142 (MQ=255)                                                                             aaTTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATa                                                                 >  1:391889/1‑150 (MQ=255)                                                                                         gCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCga                                                                               >  1:528876/1‑124 (MQ=255)                                                                                         gCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCga                                                                               <  2:528876/124‑1 (MQ=255)                                                                                            gTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAgcggc                                                                                                                                    >  1:1038676/1‑68 (MQ=255)                                                                                            gTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAgcggc                                                                                                                                    <  2:1038676/68‑1 (MQ=255)                                                                                            gTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCa                                                                                                                        <  1:260213/80‑1 (MQ=255)                                                                                            gTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCa                                                                                                                        >  2:260213/1‑80 (MQ=255)                                                                                            gTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGACGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCGCAAGTGCGAGAAGGTAGACGATACCTACGAGCTGcgcg                                                  >  2:486628/1‑150 (MQ=255)                                                                                                     aGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGAGGCCATGCCGGAGCTCAAGAGCTAGAAGCACGACGATACCTACTTGCTGCGCCACGGTGCtt                                         >  2:242053/1‑150 (MQ=255)                                                                                                         cttcGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCgg                                     <  1:1043598/150‑1 (MQ=255)                                                                                                              gCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTcgacga                                                                   >  1:8566/1‑115 (MQ=255)                                                                                                              gCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTcgacga                                                                   <  2:8566/115‑1 (MQ=255)                                                                                                                   aCCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGa                                                                                           >  2:968094/1‑86 (MQ=255)                                                                                                                   aCCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGa                                                                                           <  1:968094/86‑1 (MQ=255)                                                                                                                              gTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGtgctgc                                                     >  2:582000/1‑113 (MQ=255)                                                                                                                              gTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGtgctgc                                                     <  1:582000/113‑1 (MQ=255)                                                                                                                               tGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGgcgggtgttcttgcacgccgggttggtgcagccgaagaacttgccgaaacggccggtcttcaattgcatctcgctaccgcacttgtcgcactccaggctcggcccttcgtaacc               <  2:667586‑M2/150‑115 (MQ=255)                                                                                                                                 aaaGAACACCCGCAAGCTGCTCAAGGGCGGCGAGGCGGCGCCACCGAAGACGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGgcagccagga             <  1:843209/149‑3 (MQ=255)                                                                                                                                  aaGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTc            >  1:695907/1‑150 (MQ=255)                                                                                                                                        acCCGCAAGCTGCTCAAGAGCGGCGAGgcgggtgttcttgcacgccgggttggtgcagccgaagaacttgccgaaacggccggtcttcaattgcatctcgctaccgcacttgtcgcactccaggctcgg                           >  1:946544‑M2/1‑27 (MQ=255)                                                                                                                                        acCCGCAAGCTGCTCAAGAGCGGCGAGgcgggtgttcttgcacgccgggttggtgcagccgaagaacttgccgaaacggccggtcttcaattgcatctcgctaccgcacttgtcgcactccaggctcgg                           <  2:946544‑M2/129‑103 (MQ=255)                                                                                                                                          ccGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACACGGCGGACATGCCGGTGCTCAAGTGCGCGAAGGTCGACGATACCTACGTAGTACGCCACGGTGCTTCCGCGTTCTTCCTGGCAGCCAGCCAGGCCCCCACGaa    >  2:90404/1‑150 (MQ=255)                                                                                                                                           cGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGgtt                                  <  2:1070370/119‑1 (MQ=255)                                                                                                                                           cGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGgtt                                  <  2:1069640/119‑1 (MQ=255)                                                                                                                                           cGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGgtt                                  >  1:1070370/1‑119 (MQ=255)                                                                                                                                           cGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGgtt                                  >  1:1069640/1‑119 (MQ=255)                                                                                                                                            gCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTCCCCAAGAAcc  <  2:162352/150‑1 (MQ=255)                                                                                                                                             |                                                                                                                                                     ATCGAAGAAGGCAACTACCGCATCAAGGGTTACGAAGGGCCGAGCCTGGAGTGCGACAAGTGCGGTAGCGAGATGCAATTGAAGACCGGCCGTTTCGGCAAGTTCTTCGGCTGCACCAACCCGGCGTGCAAGAACACCCGCAAGCTGCTCAAGAGCGGCGAGGCGGCGCCACCGAAGATGGACAAGGTGGACATGCCGGAGCTCAAGTGCGAGAAGGTCGACGATACCTACGTGCTGCGCGACGGTGCTTCCGGGTTGTTCCTGGCTGCCAGCCAGTTCCCCAAGAACC  >  NC_002947/2442994‑2443282

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.