New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2731002 =	44 (1.020)	4 (0.100)	4/240	NT	9.8%	coding (296/2361 nt)	polB	DNA polymerase II
	?	NC_002947	2731040 =	32 (0.780)					coding (334/2361 nt)	polB	DNA polymerase II

AGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGATGCGCAGGGCGTTTACCGGGACGCCCAGCTCAAGCCGCAGCCAGGCTAT  >  NC_002947/2730855‑2731150                                                                                                                                                    |                                                                                                                                                     ctcgatatccagcgacaccaggcgcagcgccgggcgatagcctggctgcggcttgagctgggcgtcccggtaaacgccctgcgcatccggctggccagtgaactgcaccggtgccgtgatgaagcgctccatgaggtaacgctccggcgg                                                                                                                                                    >  2:847234‑M1/148‑150 (MQ=255) ctcgatatccagcgacaccaggcgcagcgccgggcgatagcctggctgcggcttgagctgggcgtcccggtaaacgccctgcgcatccggctggccagtgaactgcaccggtgccgtgatgaagcgctccatgaggtaacgctccggcgg                                                                                                                                                    <  1:934054‑M1/3‑1 (MQ=255)   gCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGcc                                                                                                                                                  >  2:645894/1‑150 (MQ=255)     cGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCgg                                                                                                                                                >  1:1071568/1‑150 (MQ=255)      gAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCCCAGCCTGATGCTCGGCCTCCATCCCCGCCCGACTCGCCATTTGATTCAACTGGAGCAGCGTCTGCGCCCGGCCGGt                                                                                                                                               >  1:519144/1‑150 (MQ=255)      gAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGt                                                                                                                                               >  1:912361/1‑150 (MQ=255)       aGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTa                                                                                                                                              <  2:957319/150‑1 (MQ=255)                   tgctgcTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCg                                                                                                                                  <  1:645894/150‑1 (MQ=255)                    gctgctGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGa                                                                                                                                 <  2:598276/150‑1 (MQ=255)                      tgctgGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAgg                                                                                                                               >  1:507627/1‑150 (MQ=255)                       gctgGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGCGTTTCCGCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGc                                                                                                                              <  1:561681/150‑1 (MQ=255)                              aaCGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGa                                                                                                                           <  2:190424/146‑1 (MQ=255)                              aaCGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGa                                                                                                                           >  1:190424/1‑146 (MQ=255)                              aaCGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATc                                                                                                                       >  1:448740/1‑150 (MQ=255)                              aaCGAAACCGGGACGAAGCTCAAGCCACTGCCCTTGAAGGACTTCGAGCATCGCCCGATGCCCGGCCTCTATCCCCGCCAGCATCGCCAATTGATGCAACTCGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATc                                                                                                                       >  2:491287/1‑150 (MQ=255)                               aCGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATcc                                                                                                                      >  2:137780/1‑150 (MQ=255)                                 gAAGCCGGGAAGAAGCGCAAGCCACGGCGCCTTAAGGTCTTCGAGCACCGCAGGACGATCACACTCTCGCCATGCTGGTAGGGCCAATGTATGCAACTTCGGCGGCGTGTGCGCTCTTTCTGTATCGACGTGTTCGAGGCCGATATccac                                                                                                                    <  2:125671/150‑3 (MQ=255)                                   aaCCGGGACGAAGCGCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGgcc                                                                                                                  <  1:464202/150‑1 (MQ=255)                                       gggACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGccgccg                                                                                                              <  2:448740/150‑1 (MQ=255)                                          aCGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCACCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAg                                                                                                           <  1:937250/150‑1 (MQ=255)                                                   aaGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTc                                                                                                                                   >  2:55335/1‑117 (MQ=255)                                                   aaGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTc                                                                                                                                   <  1:55335/117‑1 (MQ=255)                                                   aaGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTc                                                                                                  >  1:417559/1‑150 (MQ=255)                                                        aCTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACATCATGGa                                                                                             >  2:631800/1‑150 (MQ=255)                                                         cTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCACCTGGAGCAGCGTCTGCGCACTGCCGTTACCGACTTTTTGGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAg                                                                                            >  2:678494/1‑150 (MQ=255)                                                          tGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAgc                                                                                           <  2:540663/150‑1 (MQ=255)                                                               cTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGa                                                                                                            <  2:339530/128‑1 (MQ=255)                                                               cTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGa                                                                                                            >  1:339530/1‑128 (MQ=255)                                                                      gtaaacgccctgcgcatccggctggccagtgaactgcaccggtgccgtgatgaagcgctccatgaggtaacgctccggCGGCCGGTATCGACGTGTTCGAGGCCGATATCCgg                                                                                                                    >  1:940662‑M1/79‑113 (MQ=255)                                                                      gtaaacgccctgcgcatccggctggccagtgaactgcaccggtgccgtgatgaagcgctccatgaggtaacgctccggCGGCCGGTATCGACGTGTTCGAGGCCGATATCCgg                                                                                                                    <  2:940662‑M1/35‑1 (MQ=255)                                                                       cTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGGGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTGACCTCATGGAGCGCTTCATCGCGGc                                                                              >  2:554633/1‑150 (MQ=255)                                                                        ttCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCa                                                                             >  2:658873/1‑150 (MQ=255)                                                                           gAGCATCGGGCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCg                                                                          >  2:633198/1‑150 (MQ=255)                                                                             ccctgcgcatccggctggccagtgaactgcaccggtgccgtgatgaagcgctccatgaggtaacgctccggCGGCCGGTATCGACGTGTTCGAGGCCGATATcc                                                                                                                      <  2:304839‑M1/33‑1 (MQ=255)                                                                             ccctgcgcatccggctggccagtgaactgcaccggtgccgtgatgaagcgctccatgaggtaacgctccggCGGCCGGTATCGACGTGTTCGAGGCCGATATcc                                                                                                                      >  1:304839‑M1/72‑104 (MQ=255)                                                                                tCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCa                                                                     <  1:137780/150‑1 (MQ=255)                                                                                tCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCa                                                                     >  2:771369/1‑150 (MQ=255)                                                                                   cccGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGtt                                                                  >  1:807634/1‑150 (MQ=255)                                                                                      gATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCAc                                                               <  2:507627/150‑1 (MQ=255)                                                                                         gCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCAATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTgg                                                            >  2:881908/1‑150 (MQ=255)                                                                                                 tctATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTTATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCgg                                                    >  2:310264/1‑150 (MQ=255)                                                                                                   tatcCCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCTTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGAt                                                  <  1:63594/150‑1 (MQ=255)                                                                                                   tataCCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGAt                                                  >  1:154392/1‑150 (MQ=255)                                                                                                     taCCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGATgc                                                <  2:1071568/150‑1 (MQ=255)                                                                                                          gCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGATGCGCAgg                                           <  1:771369/150‑1 (MQ=255)                                                                                                          gCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCAATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGATGCGCAgg                                           <  1:881908/150‑1 (MQ=255)                                                                                                           ccAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGATGCGCAggg                                          <  2:912361/150‑1 (MQ=255)                                                                                                             aGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGATGCGCAGGGCg                                        <  1:1001974/150‑1 (MQ=255)                                                                                                                 tCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGCCCAGCCGGATCCGCAGGGCGtttc                                    >  2:83898/1‑149 (MQ=255)                                                                                                                    ccAATTGATGCAACTGGAGCAGCGTCTGCGCTCGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTCGCCAGCCGGATGCGCAGGGCGTTTACCg                                 <  2:581513/150‑1 (MQ=255)                                                                                                                    ccAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGATGCGCAGGGCGTTTACCg                                 >  1:660847/1‑150 (MQ=255)                                                                                                                                               gcgcACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGATGCGCAGGGCGTTTACCGGGACGCCCAGCTCAAGCCGCAGCCAgg      <  1:717429/150‑1 (MQ=255)                                                                                                                                                   aCGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGATGCGCAGGGCGTTTACCGGGACGCCCAGCCCAAGCCGCAGCCAGGCTAt  >  1:446919/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                     AGGCCGAGCACGCCCGTGTGCTGCTGGCCAACGAAACCGGGACGAAGCTCAAGCCACTGCGCCTGAAGGACTTCGAGCATCGCCCGATGCTCGGCCTCTATACCCGCCAGCATCGCCAATTGATGCAACTGGAGCAGCGTCTGCGCACGGCCGGTATCGACGTGTTCGAGGCCGATATCCGGCCGCCGGAGCGTTACCTCATGGAGCGCTTCATCACGGCACCGGTGCAGTTCACTGGCCAGCCGGATGCGCAGGGCGTTTACCGGGACGCCCAGCTCAAGCCGCAGCCAGGCTAT  >  NC_002947/2730855‑2731150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.