| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2852445 | 37 (0.850) | 5 (0.120) | 5/242 | NT | 11.9% | coding (930/1038 nt) | PP_2505 | GAF domain/GGDEF domain‑containing protein |
| ? | NC_002947 | = 2852454 | 39 (0.950) | coding (921/1038 nt) | PP_2505 | GAF domain/GGDEF domain‑containing protein | |||||
GATGCGTACCCTCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAGGCTACGAATTCCTCTCC > NC_002947/2852300‑2852594 | gATGCGTACCCTCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCa > 1:246049/1‑150 (MQ=255) tACCCTCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGcgccctgctc > 2:939331‑M1/1‑140 (MQ=255) tACCCTCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGATCAGGGCGc < 1:543015‑M2/150‑2 (MQ=255) cTCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGcaccc < 2:740849‑M2/150‑6 (MQ=255) tCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAg < 2:918914/140‑1 (MQ=255) tCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAg > 1:918914/1‑140 (MQ=255) gATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCt > 2:1040380/1‑150 (MQ=255) ccGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCAt < 1:3195/150‑1 (MQ=255) cGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCTGTCAGCGCGCTTTGTTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATg > 2:604779/1‑150 (MQ=255) cGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATg > 1:369389/1‑150 (MQ=255) cTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCt < 1:740849/150‑1 (MQ=255) aaCTTCCTCAGGATAACGCTGGCGAATAGACCTCTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGcacccagggtgagcagattgatgat > 2:851087‑M2/1‑125 (MQ=255) aGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGCGCCCTGCTcacccagggtgagcagattgatgatgcaataaag > 1:939331‑M2/1‑116 (MQ=255) aGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCtt < 2:660728/139‑1 (MQ=255) aGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCtt > 1:660728/1‑139 (MQ=255) cGCTGACACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTAATTGCCCCATCAAGCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTaa < 2:1062116/150‑1 (MQ=255) gCTGGCACATATACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTTATGGTCATCTTCCGAGGGCCGCCGGGTAAc < 2:228880/150‑1 (MQ=255) ggTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGa > 1:567623/1‑150 (MQ=255) aCGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtga > 2:157595/1‑150 (MQ=255) cGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtgac < 1:706850/150‑1 (MQ=255) accaTGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtgactgac < 2:409881/149‑1 (MQ=255) accaTGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtgactgac > 1:409881/1‑149 (MQ=255) ccaTGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGc > 2:369936/1‑150 (MQ=255) ccaTGTTTGGCCGCATAGAGACCGCCGACAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtgaatgaaac > 1:391081/1‑147 (MQ=255) aTGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCAACTAGACTGACGCaa > 2:308046/1‑150 (MQ=255) gCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATg > 1:457943/1‑84 (MQ=255) gCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATg < 2:457943/84‑1 (MQ=255) gCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTcc < 1:847626/150‑1 (MQ=255) gCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTcc < 2:246049/150‑1 (MQ=255) cGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACa < 2:298742/110‑1 (MQ=255) cGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACa > 1:298742/1‑110 (MQ=255) gccgTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGcgccctgctcacccagggt > 2:693698‑M1/1‑46 (MQ=255) gccgTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGcgccctgctcacccagggt < 1:693698‑M1/65‑20 (MQ=255) cAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCtt < 2:369389/150‑1 (MQ=255) gcgcgcTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGcc < 2:423242/107‑1 (MQ=255) gcgcgcTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGcc > 1:423242/1‑107 (MQ=255) cgcTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTACGCGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCCCAATCTGCGACAATTCTTGGCTa > 1:31627/1‑150 (MQ=255) cTTTATTGCATCATCAATCTGCTCACCCTGGGTGagcagggcgcacccagggtgagcagattgatgatgcaataaagcgcgctgacggcggtctctatgcggccaaacatggtggacgtgaccaagttgtctatgtgccagcgttatcct > 1:939331‑M1/1‑34 (MQ=255) tttATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTgcgc < 1:348082/134‑1 (MQ=255) tttATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTgcgc > 2:348082/1‑134 (MQ=255) gCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTACGCAATCTGCGCCAATTCTTGGCTATCTTTAAcc > 1:1073520/1‑150 (MQ=255) atcatcAATCTGCTCACCCTGGGTGcgccctgctcacccagggtgagcagattgatgatgcaataaagcgcgctgacggcggtctctatgcggccaaacatggtggacgtgaccaagaggtctattcgccagcgttatcctgaggaagtt > 2:851087‑M1/1‑25 (MQ=255) tcaATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTGCGCAATCTGCGCCAATCCTTGGCTATCTTTAACCCGTAGc > 1:964994/1‑150 (MQ=255) gcccTGCTCACCCAGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTgc < 2:142802/115‑1 (MQ=255) gcccTGCTCACCCAGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTgc > 1:142802/4‑118 (MQ=255) aTCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAg < 1:318707/150‑1 (MQ=255) cTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAGGCTAc > 2:1079449/1‑150 (MQ=255) cTCACCCTGGGTGAGCAGGGCGCACCCAATGCGCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAGATAACTCTCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAGGCTAc < 1:1040380/150‑1 (MQ=255) cTCACCCTGAGTGAGCAGGGCGCACCCAATGCACATCGTCATCTTCCGATGGCCACCTGGTAACAGATACGTCGCGCTGCCAATTGACTTACTCAAGCGCTCCGCAATCTGCGCTAATTCTTGGCTATCTTTAACCCGTAGCAATGCTAc < 1:338625/150‑1 (MQ=255) aCCCTGGGTGAGCAGGGCGcacccagggtgagcagattgatgatgcaataaagcgcgctgacggc < 1:693698‑M2/65‑47 (MQ=255) aCCCTGGGTGAGCAGGGCGcacccagggtgagcagattgatgatgcaataaagcgcgctgacggc > 2:693698‑M2/1‑19 (MQ=255) ccagggTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAGGCTACGAAtt > 1:112675/4‑150 (MQ=255) gggTGcgccctgctcacccagggtgagcagattgatgatgcaataaagcgcgctgacggcggtctctatgcggccaaacatggtggacgtgaccaagttgtctatgtgccagcgttatcctgaggaagttaagatctccggatccgggag < 2:740849‑M1/150‑146 (MQ=255) gcgccctgatcacccagggtgagcagattgatgatgcaataaagcgcgctgacggcggtctctatgcggccaaacatggtggacgtgaccaagttgtctatgtgccagcgttatcctgaggaagttaagatctccggatccgggagggta < 1:543015‑M1/150‑150 (MQ=255) gAGCAGGGCGcacccagggtgagcagattgatgatgcaataaagcgcgctgacggcggtctctatgcggccaaacatggtggacgtgaccaagttgtctatgtgccagcgttatcctgaggaagttaagatctccggatccgggagggta > 2:939331‑M2/1‑10 (MQ=255) | GATGCGTACCCTCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAGGCTACGAATTCCTCTCC > NC_002947/2852300‑2852594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |