New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2852445	37 (0.850)	5 (0.120)	5/242	NT	11.9%	coding (930/1038 nt)	PP_2505	GAF domain/GGDEF domain‑containing protein
	?	NC_002947	= 2852454	39 (0.950)					coding (921/1038 nt)	PP_2505	GAF domain/GGDEF domain‑containing protein

TACCCTCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAGGCTACGAATTCCTCTCC  >  NC_002947/2852306‑2852594                                                                                                                                                     |                                                                                                                                             tACCCTCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGATCAGGGCGc                                                                                                                                             <  1:543015‑M2/150‑2 (MQ=255)     cTCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGcaccc                                                                                                                                         <  2:740849‑M2/150‑6 (MQ=255)           gATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCt                                                                                                                                   >  2:1040380/1‑150 (MQ=255)              ccGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCAt                                                                                                                                <  1:3195/150‑1 (MQ=255)               cGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCTGTCAGCGCGCTTTGTTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATg                                                                                                                               >  2:604779/1‑150 (MQ=255)               cGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATg                                                                                                                               >  1:369389/1‑150 (MQ=255)                      cTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCt                                                                                                                        <  1:740849/150‑1 (MQ=255)                         aaCTTCCTCAGGATAACGCTGGCGAATAGACCTCTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGcacccagggtgagcagattgatgat                                                                                                                     >  2:851087‑M2/1‑125 (MQ=255)                                  aGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGCGCCCTGCTcacccagggtgagcagattgatgatgcaataaag                                                                                                            >  1:939331‑M2/1‑116 (MQ=255)                                  aGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCtt                                                                                                                       <  2:660728/139‑1 (MQ=255)                                  aGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCtt                                                                                                                       >  1:660728/1‑139 (MQ=255)                                         cGCTGACACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTAATTGCCCCATCAAGCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTaa                                                                                                     <  2:1062116/150‑1 (MQ=255)                                          gCTGGCACATATACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTTATGGTCATCTTCCGAGGGCCGCCGGGTAAc                                                                                                    <  2:228880/150‑1 (MQ=255)                                                             ggTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGa                                                                                 >  1:567623/1‑150 (MQ=255)                                                                 aCGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtga                                                                             >  2:157595/1‑150 (MQ=255)                                                                  cGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtgac                                                                            <  1:706850/150‑1 (MQ=255)                                                                       accaTGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtgactgac                                                                        >  1:409881/1‑149 (MQ=255)                                                                       accaTGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtgactgac                                                                        <  2:409881/149‑1 (MQ=255)                                                                        ccaTGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGc                                                                      >  2:369936/1‑150 (MQ=255)                                                                        ccaTGTTTGGCCGCATAGAGACCGCCGACAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtgaatgaaac                                                                      >  1:391081/1‑147 (MQ=255)                                                                          aTGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCAACTAGACTGACGCaa                                                                    >  2:308046/1‑150 (MQ=255)                                                                                 gCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATg                                                                                                                               <  2:457943/84‑1 (MQ=255)                                                                                 gCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATg                                                                                                                               >  1:457943/1‑84 (MQ=255)                                                                                 gCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTcc                                                             <  1:847626/150‑1 (MQ=255)                                                                                 gCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTcc                                                             <  2:246049/150‑1 (MQ=255)                                                                                   cGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACa                                                                                                   <  2:298742/110‑1 (MQ=255)                                                                                   cGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACa                                                                                                   >  1:298742/1‑110 (MQ=255)                                                                                                    cAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCtt                                          <  2:369389/150‑1 (MQ=255)                                                                                                      gcgcgcTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGcc                                                                                   <  2:423242/107‑1 (MQ=255)                                                                                                      gcgcgcTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGcc                                                                                   >  1:423242/1‑107 (MQ=255)                                                                                                         cgcTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTACGCGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCCCAATCTGCGACAATTCTTGGCTa                                     >  1:31627/1‑150 (MQ=255)                                                                                                            tttATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTgcgc                                                  >  2:348082/1‑134 (MQ=255)                                                                                                            tttATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTgcgc                                                  <  1:348082/134‑1 (MQ=255)                                                                                                                  gCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTACGCAATCTGCGCCAATTCTTGGCTATCTTTAAcc                            >  1:1073520/1‑150 (MQ=255)                                                                                                                        tcaATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTGCGCAATCTGCGCCAATCCTTGGCTATCTTTAACCCGTAGc                      >  1:964994/1‑150 (MQ=255)                                                                                                                          gcccTGCTCACCCAGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTgc                                                    <  2:142802/115‑1 (MQ=255)                                                                                                                          gcccTGCTCACCCAGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTgc                                                    >  1:142802/4‑118 (MQ=255)                                                                                                                           aTCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAg                   <  1:318707/150‑1 (MQ=255)                                                                                                                                cTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAGGCTAc              >  2:1079449/1‑150 (MQ=255)                                                                                                                                cTCACCCTGGGTGAGCAGGGCGCACCCAATGCGCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAGATAACTCTCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAGGCTAc              <  1:1040380/150‑1 (MQ=255)                                                                                                                                cTCACCCTGAGTGAGCAGGGCGCACCCAATGCACATCGTCATCTTCCGATGGCCACCTGGTAACAGATACGTCGCGCTGCCAATTGACTTACTCAAGCGCTCCGCAATCTGCGCTAATTCTTGGCTATCTTTAACCCGTAGCAATGCTAc              <  1:338625/150‑1 (MQ=255)                                                                                                                                   aCCCTGGGTGAGCAGGGCGcacccagggtgagcagattgatgatgcaataaagcgcgctgacggc                                                                                                <  1:693698‑M2/65‑47 (MQ=255)                                                                                                                                   aCCCTGGGTGAGCAGGGCGcacccagggtgagcagattgatgatgcaataaagcgcgctgacggc                                                                                                >  2:693698‑M2/1‑19 (MQ=255)                                                                                                                                     ccagggTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAGGCTACGAAtt         >  1:112675/4‑150 (MQ=255)                                                                                                                                            gAGCAGGGCGcacccagggtgagcagattgatgatgcaataaagcgcgctgacggcggtctctatgcggccaaacatggtggacgtgaccaagttgtctatgtgccagcgttatcctgaggaagttaagatctccggatccgggagggta  >  2:939331‑M2/1‑10 (MQ=255)                                                                                                                                              gCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtgac                                                                            >  1:969561/1‑74 (MQ=255)                                                                                                                                              gCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATtgac                                                                            <  2:969561/74‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                             TACCCTCCCGGATCCGGAGATCTTAACTTCCTCAGGATAACGCTGGCACATAGACAACTTGGTCACGTCCACCATGTTTGGCCGCATAGAGACCGCCGTCAGCGCGCTTTATTGCATCATCAATCTGCTCACCCTGGGTGAGCAGGGCGCACCCAATGCTCATGGTCATCTTCCGAGGGCCGCCGGGTAACAGAAACGGCGCGCTGCCGATTGACTGACGCAAGCGCTCCGCAATCTGCGCCAATTCTTGGCTATCTTTAACCCGTAGCAAGGCTACGAATTCCTCTCC  >  NC_002947/2852306‑2852594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.