New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3121091	39 (0.900)	3 (0.070)	3/246	NT	7.2%	coding (396/753 nt)	PP_2737	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	= 3121106	39 (0.930)					coding (381/753 nt)	PP_2737	short‑chain dehydrogenase/reductase family oxidoreductase

TCCACGAAGCCTGGGCTCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGG  >  NC_002947/3120945‑3121239                                                                                                                                                   |                                                                                                                                                     tCCACGAAGCCTGGGCTCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATc                                                                                                                                                   >  1:474465/1‑150 (MQ=255) cccACGAAGCCTGGGCTCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATc                                                                                                                                                   <  2:413584/149‑1 (MQ=255)     cGAAGCCTGGGCTCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATcacca                                                                                                                                               <  1:371161/150‑1 (MQ=255)         gCCTGGGCTCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAg                                                                                                                                           <  1:195537/150‑1 (MQ=255)          ccTGGGCTCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCTATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCC                                                                                                                                                      <  1:755924‑M1/138‑1 (MQ=255)          ccTGGGCTCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCTATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCC                                                                                                                                                      >  2:755924‑M1/1‑138 (MQ=255)           cTGGGCTCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGt                                                                                                                                         <  1:678089/150‑1 (MQ=255)               gCTCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGgg                                                                                                                                     >  1:92276‑M2/1‑148 (MQ=255)                 tCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGgggc                                                                                                                                   <  2:1046867‑M2/150‑5 (MQ=255)                         gTGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCt                                                                                                                           <  1:904209/150‑1 (MQ=255)                          tGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCAccacca                                                                                                                                            <  1:169685/132‑1 (MQ=255)                          tGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCAccacca                                                                                                                                            >  2:169685/1‑132 (MQ=255)                                     ccTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAg                                                                                                               <  2:716183/150‑1 (MQ=255)                                        tCGCGGGCCAGGTCGATTCGCTGTGACTCAACACCCACGCCCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGATAGGCCAGCCAGGTTACCGAACTGCCCccacctggtggtgatgggcagttcggtaacctggctggcctt                                                                                                            <  2:640926‑M1/150‑43 (MQ=255)                                           cgGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGt                                                                                                         <  1:1128081/150‑1 (MQ=255)                                                   gTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTgccgccgc                                                                                                 >  1:697342/1‑150 (MQ=255)                                                      gATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAg                                                                                              <  1:1046867/150‑1 (MQ=255)                                                         tCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGACCTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCa                                                                                           <  2:997408/150‑1 (MQ=255)                                                           gCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTGCCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGt                                                                                         >  1:907916/1‑150 (MQ=255)                                                                 aCTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGNTGa                                                                                   <  2:697342/150‑1 (MQ=255)                                                                   tCCACCAGATAGCGCACTGCGGCCTTGGAGGCCGCGGAAGCGCCGTCGCTGGGCAAGGCCAGCCAGGGGACGGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGAAGCTGACg                                                                                 >  1:922152/1‑150 (MQ=255)                                                                   tCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACg                                                                                 >  1:220647/1‑150 (MQ=255)                                                                   tCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACg                                                                                 >  2:490557/1‑150 (MQ=255)                                                                     caccaGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGc                                                                                                                             >  2:1502/1‑104 (MQ=255)                                                                     caccaGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGc                                                                                                                             <  1:1502/104‑1 (MQ=255)                                                                     caccaGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGcc                                                                               >  1:1052408/1‑150 (MQ=255)                                                                       ccaGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCca                                                                             <  2:922152/150‑1 (MQ=255)                                                                               cgcACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGttt                                                                                                                               >  1:868016/1‑92 (MQ=255)                                                                               cgcACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGttt                                                                                                                               <  2:868016/92‑1 (MQ=255)                                                                               cgcACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCATACGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTg                                                                     <  1:79367/150‑1 (MQ=255)                                                                                       ggCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCccacctggtggtgatgggc                                                                                                                                   >  1:303486‑M1/1‑61 (MQ=255)                                                                                       ggCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCccacctggtggtgatgggc                                                                                                                                   <  2:303486‑M1/80‑20 (MQ=255)                                                                                         ccTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGa                                                           >  1:1126534/1‑150 (MQ=255)                                                                                          cTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGAc                                                          >  2:582864/1‑150 (MQ=255)                                                                                          cTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCGGACGCCCAGCAGGTTGGTGCGCATGAc                                                          >  1:551203/1‑150 (MQ=255)                                                                                                cGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCAccacca                                                                                                                                            >  1:956939/1‑62 (MQ=255)                                                                                                cGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCAccacca                                                                                                                                            <  2:956939/62‑1 (MQ=255)                                                                                                  ccccATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGa                                                  <  1:582864/150‑1 (MQ=255)                                                                                                    ccATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGAcc                                                >  2:1009931/1‑150 (MQ=255)                                                                                                       tAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCGGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAAc                                             <  2:820553/150‑1 (MQ=255)                                                                                                                      ggCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGc                              <  2:1126534/150‑1 (MQ=255)                                                                                                                       gCAAGGCCAGCCAGGTTGCCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGcc                             <  2:907916/150‑1 (MQ=255)                                                                                                                        cAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGccc                            <  2:220647/150‑1 (MQ=255)                                                                                                                         aaGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGgggcagttcggtaacctggctggcctatccccgcgctggcgcctatggggcgtccaaggccgcagtgggcgtgggtgttgagtcacagcgaatcgacctggcccgcga                           <  2:640926‑M2/150‑109 (MQ=255)                                                                                                                         aaGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCa                           <  2:474465/150‑1 (MQ=255)                                                                                                                           ggCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAgg                         <  2:756846/150‑1 (MQ=255)                                                                                                                                 ccagGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAg                   <  2:1052408/150‑1 (MQ=255)                                                                                                                                        aCCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCg            >  1:348020/1‑150 (MQ=255)                                                                                                                                           gAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAg         <  2:348020/150‑1 (MQ=255)                                                                                                                                                gCCCccacctggtggtgatgggcagttcggtaacctggctggccttgccccgcgctggcgcctatggggcgtccaaggccgcagtgcgctatctggtggagtcacagcgaatcgacctggcccgcgaaggcatcgcggtcaccctggtga    <  2:1046867‑M1/150‑147 (MQ=255)                                                                                                                                                gCCCATCACCACCAGGTGGgggcagttcggtaacctggctggccttgccccgcgctggcgcctatggggcgtccaaggcc                                                                          >  1:303486‑M2/1‑19 (MQ=255)                                                                                                                                                gCCCATCACCACCAGGTGGgggcagttcggtaacctggctggccttgccccgcgctggcgcctatggggcgtccaaggcc                                                                          <  2:303486‑M2/80‑62 (MQ=255)                                                                                                                                                 cccATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCg   >  1:124286/1‑150 (MQ=255)                                                                                                                                                 cccATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCg   >  1:124002/1‑150 (MQ=255)                                                                                                                                                  ccccacctggtggtgatgggcagttcggtaacctggctggccttgccccgcgctggcgcctatggggcgtccaaggccgcagtgcgctatctggtggagtcacagcgaatcgacctggcccgcgaaggcatcgcggtcaccctggtgagc  >  1:92276‑M1/1‑2 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TCCACGAAGCCTGGGCTCACCAGGGTGACCGCGATGCCTTCGCGGGCCAGGTCGATTCGCTGTGACTCCACCAGATAGCGCACTGCGGCCTTGGACGCCCCATAGGCGCCAGCGCGGGGCAAGGCCAGCCAGGTTACCGAACTGCCCATCACCACCAGGTGGGGGCGTTTGCCTGCGCGAAGCAAGGGCAGTGCCGCCGCCAGGCAGTAGCTGACGCCCAGCAGGTTGGTGCGCATGACGCGCTCGACCAACGCCGGATCGAAATGCCCAGGCTCCAGGTATTCGCAGGTGCCGG  >  NC_002947/3120945‑3121239

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.