New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3960677 =	43 (0.990)	3 (0.070)	3/244	NT	6.6%	intergenic (‑249/‑80)	mnxG/PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein
	?	NC_002947	3960711 =	43 (1.030)					intergenic (‑283/‑46)	mnxG/PP_3491	manganese‑oxidizing multicopper oxidase/enoly‑coenzyme A hydratase/isomerase family protein

ATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCATACCCCGGCAGCAACAGACCATGTACTGGCCGAGGTCCGCAACCAGAT  >  NC_002947/3960533‑3960821                                                                                                                                                 |                                                                                                                                                 aTTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCa                                                                                                                                             <  1:875213/150‑1 (MQ=255)      ggaggaTCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCa                                                                                                                                        <  1:1006264/150‑1 (MQ=255)          gaTCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGAt                                                                                                                                    >  2:894776/1‑150 (MQ=255)                   gaagGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGAtc                                                                                                                           <  1:197984/148‑1 (MQ=255)                            cccGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGa                                                                                                                  >  2:391979/1‑150 (MQ=255)                             ccGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGaa                                                                                                                 <  1:33777/150‑1 (MQ=255)                             ccGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCCAGTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGaa                                                                                                                 <  1:899952/150‑1 (MQ=255)                                catgctggttgcggacttcggccagtacatggtctgttgctgccggggtatgagcgtgtgcagtcattgcgttctccctgctttgttattgattttccaagtgaagtctggagTTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTc                                                                                                              >  1:715999‑M1/114‑150 (MQ=255)                                    gggggACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGa                                                                                                          <  1:656237/150‑1 (MQ=255)                                             aaTCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGGACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATGCTGCGATCCTCCAGCGAACTCCAGACTTCACTTg                                                                                                 >  1:591629/1‑150 (MQ=255)                                             aaTCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTg                                                                                                 >  1:1110623/1‑150 (MQ=255)                                                ctcggccagtacatggtctgttgctgccggggtatgagcgtgtgcagtcattgcgttctccctgctttgttattgattttccaagtgaagtctggagTTCGCATGCCAGGATCCTGCGATCCTCCAGCGAAc                                                                                                                <  2:843639‑M1/35‑1 (MQ=255)                                                ctcggccagtacatggtctgttgctgccggggtatgagcgtgtgcagtcattgcgttctccctgctttgttattgattttccaagtgaagtctggagTTCGCATGCCAGGATCCTGCGATCCTCCAGCGAAc                                                                                                                >  1:843639‑M1/98‑132 (MQ=255)                                                         gCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATc                                                                                                                                   <  1:44200/104‑1 (MQ=255)                                                         gCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATc                                                                                                                                   >  2:44200/1‑104 (MQ=255)                                                         gCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATaa                                                                                     >  2:802921/1‑150 (MQ=255)                                                         gCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATaa                                                                                     >  1:732722/1‑150 (MQ=255)                                                          cAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAAc                                                                                    >  2:882337/1‑150 (MQ=255)                                                               gctgctCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCCGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGc                                                                               >  1:247334/1‑150 (MQ=255)                                                                      cacaAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGc                                                                                                                               <  1:494322/95‑1 (MQ=255)                                                                      cacaAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGc                                                                                                                               >  2:494322/1‑95 (MQ=255)                                                                       acaAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGaa                                                                       <  1:882337/150‑1 (MQ=255)                                                                        caAGCGCGCGCTGGCCTCACACAAGGTAACAACGCATGTTTCTCTTTCACAATTTTCGATTGTGCAAGGCAATTTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAAc                                                                      <  1:247461/150‑1 (MQ=255)                                                                            cgcgcgcTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCaa                                                                  <  1:391979/150‑1 (MQ=255)                                                                            cgcgcgcAAGCCGCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGAAGGGCAAGTTCGCATGACTCCAGCCTGCGATACTCCTGCGAACTCCAGAATTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCaa                                                                  <  1:922051/150‑1 (MQ=255)                                                                                 gcTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACt                                                             <  1:210223/150‑1 (MQ=255)                                                                                 gcTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACt                                                             <  1:664726/150‑1 (MQ=255)                                                                                     gCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATc                                                                                          <  2:512775/117‑1 (MQ=255)                                                                                     gCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATc                                                                                          >  1:512775/1‑117 (MQ=255)                                                                                          acacaAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCt                                                    >  2:208742/1‑150 (MQ=255)                                                                                           cacaAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTc                                                   >  1:1113937/1‑150 (MQ=255)                                                                                             caAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCAt                                                 >  2:1017129/1‑150 (MQ=255)                                                                                                  tAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACGGCACACGCTCATAcccc                                            >  1:334773/1‑150 (MQ=255)                                                                                                   aaaaaCGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCATACCCCg                                           <  1:894776/150‑1 (MQ=255)                                                                                                    aaaaCGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATc                                                                                          >  2:960322/1‑102 (MQ=255)                                                                                                    aaaaCGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATc                                                                                          <  1:960322/102‑1 (MQ=255)                                                                                                     aaaCGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCATACCCCGgc                                         >  2:1013356/1‑150 (MQ=255)                                                                                                          cACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCATACCCCGGCAGCaa                                    <  1:613119/150‑1 (MQ=255)                                                                                                                    ttGCACAATTGTCGATTGTGCATGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGGGAGCTCCAGACTTCACTTGAAAAAACAATAACAAAGCAGGGAGAACTCAATGGCTGCACACGCTCATACCCCGGCGGCAACAGACCATGt                          >  2:336916/1‑150 (MQ=255)                                                                                                                    ttGCACAATCGACAATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCATACCCCGGCAGCAACAGACCATGt                          >  1:979526/1‑150 (MQ=255)                                                                                                                         caATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCATACCCCGGCAGCAACAGACCATGTACTgg                     <  1:969470/150‑1 (MQ=255)                                                                                                                            ttGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACt                                                             >  1:124022/1‑107 (MQ=255)                                                                                                                            ttGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACt                                                             <  2:124022/107‑1 (MQ=255)                                                                                                                               acaaTTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCATACCCCGGCAGCAACAGACCATGTACTGGCCGAgg               <  2:979526/147‑1 (MQ=255)                                                                                                                                 gATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAAAAACAAAGCAGGGAGAACGCAATGACTGCACACGCCCATACCCCGGCAGCAACAGACCATGTACTGGCAGAGGTc             >  1:254684/1‑150 (MQ=255)                                                                                                                                  aTTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCATACCCCGGCAGCAACAGACCATGTACTGGCCGAGGTcc            <  1:208742/150‑1 (MQ=255)                                                                                                                                            gCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCATACCCCGGCAGCAACAGACCATGTACTGGCCGAGGTCCGCAACCAGAt  >  2:954680/1‑150 (MQ=255)                                                                                                                                                 |                                                                                                                                                 ATTGGGGAGGATCCCCCAGCAGGTTCCCCCGAATCGGGGGACGGAATCCCGTGGGGGCAAAGGCTGCTCCACAAGCGCGCGCTGGCCTCACACAAGGTAAAAACGCACGGTACCCTTGCACAATTGTCGATTGTGCAAGGCAAATTCGCATGCCAGGATCCTGCGATCCTCCAGCGAACTCCAGACTTCACTTGGAAAATCAATAACAAAGCAGGGAGAACGCAATGACTGCACACGCTCATACCCCGGCAGCAACAGACCATGTACTGGCCGAGGTCCGCAACCAGAT  >  NC_002947/3960533‑3960821

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.