New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5030148	44 (1.020)	3 (0.070)	3/244	NT	6.9%	coding (739/1353 nt)	PP_4433	amino acid MFS transporter
	?	NC_002947	= 5030172	39 (0.940)					coding (763/1353 nt)	PP_4433	amino acid MFS transporter

GGGTGGCGCGTTCCATTCCTGATCGCAGCTCCTCTGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTACATGCACAAGGAAGTTGGGGCGAGCGAGAACATGTCATTGCTTGCGCC  >  NC_002947/5030004‑5030296                                                                                                                                                 |                                                                                                                                                     gggTGGCGCGTTCCATTCCTGATCGCAGCTCCTCTGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAAtt                                                                                                                                                 >  2:715918/1‑150 (MQ=255)    tGGCGCGTTCCATTCCTGATCGCAGCTCCTCTGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAAttttt                                                                                                                                              <  2:646019/150‑1 (MQ=255)             ctaTTCCTGATCGCAGCTCCTCTGGGCGTCACCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATAc                                                                                                                                     <  2:207003/148‑1 (MQ=255)              cATTCCTGATCGCAGCTCCTCTGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCGAGCGGGCCGGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACa                                                                                                                                    >  1:249449/1‑150 (MQ=255)              cATTCCTGATCGCAGCTCCTCTGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACa                                                                                                                                    >  2:392777/1‑150 (MQ=255)                ttCCTGATCGCAGCTCCTCTGGGCGTCATCGCGGTCTATTTGCGNACCANGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACaag                                                                                                                                  >  1:207003/1‑149 (MQ=255)                    tGATCGCAGCTCCTCTGGGCGTCATCGCGGTTTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAgg                                                                                                                              >  2:945264/1‑150 (MQ=255)                      aTCGCAGCTCCTCTGGGCGTCATCGCGGTCTATTTGCGCACCAGGACCGATGATACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGca                                                                                                                            >  1:1092050‑M2/1‑148 (MQ=255)                         gCAGCTCCTCTGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGcagca                                                                                                                         <  2:1020354‑M2/150‑6 (MQ=255)                             ctcctcTGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGcctttttgtatttcccaaaaatttcagcaatag                                                                                                                     <  1:990125‑M1/150‑34 (MQ=255)                             ctcctcTGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGt                                                                                                                     >  1:43381/1‑150 (MQ=255)                              tcctcTGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTc                                                                                                                    <  1:839000/150‑1 (MQ=255)                                ctctGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGc                                                                                                                  >  1:1008594/1‑150 (MQ=255)                                 tctGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCt                                                                                                                 >  2:600084/1‑150 (MQ=255)                                   tGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCCGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAg                                                                                                               <  2:760152/150‑1 (MQ=255)                                                ggTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTagc                                                                                                  <  1:1027619/150‑1 (MQ=255)                                                 gTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAACACGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTagca                                                                                                 <  1:966957/150‑1 (MQ=255)                                                         gcgcACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGaa                                                                                         <  1:715918/150‑1 (MQ=255)                                                         gcgcACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGaa                                                                                         <  1:600084/150‑1 (MQ=255)                                                         gcgcACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTCCTGAAATTACTGGGACGCAATAATATTCATCAGTGTCGCTAGGGGTTTTGGTAGCAGCACTGaa                                                                                         <  1:22360/150‑1 (MQ=255)                                                              ccAGGAGCGGGGACCGCCCTGTGTTTCTAGAGTTCGAAAAGAAGGTGGCAAGCGAGCCTGTTCGACCGAAGAGTTCGATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATaa                                                                                    <  2:420544/150‑1 (MQ=255)                                                               cAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGaa                                                                                         >  2:611110/1‑144 (MQ=255)                                                               cAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGaa                                                                                         <  1:611110/144‑1 (MQ=255)                                                               cAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAAc                                                                                   >  1:702067/1‑150 (MQ=255)                                                                    tCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACttatt                                                                              <  2:43381/150‑1 (MQ=255)                                                                     cGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACttatta                                                                             <  1:1020354/150‑1 (MQ=255)                                                                       aaGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTTTc                                                                                                                    <  2:545354/109‑1 (MQ=255)                                                                       aaGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTc                                                                                                                    >  1:545354/1‑109 (MQ=255)                                                                             ccccTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCctgc                                                                     >  2:790824/1‑150 (MQ=255)                                                                              cccTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGcctttttgtatttcccaaaaatttcagcaa                                                                                                                        <  1:1004479‑M1/98‑31 (MQ=255)                                                                              cccTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGcctttttgtatttcccaaaaatttcagcaa                                                                                                                        >  2:1004479‑M1/1‑68 (MQ=255)                                                                              cccTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAAttttt                                                                                                                                              >  1:559393/1‑76 (MQ=255)                                                                              cccTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAAttttt                                                                                                                                              <  2:559393/76‑1 (MQ=255)                                                                              cccTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTc                                                                                                                    <  2:244400/102‑1 (MQ=255)                                                                              cccTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAAGACAAAAAGGCAGCATTGTc                                                                                                                    >  1:244400/1‑102 (MQ=255)                                                                                      ttCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACa                                                            <  1:598333/150‑1 (MQ=255)                                                                                           gagCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCg                                                       >  2:569265/1‑150 (MQ=255)                                                                                                 gAAAAGAAGATGGCAAGCGATCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTAc                                                 >  2:626485/1‑150 (MQ=255)                                                                                                 gAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTAc                                                 >  1:1023245/1‑150 (MQ=255)                                                                                                      gaagaTGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCctgc                                                                     >  2:379362/1‑125 (MQ=255)                                                                                                      gaagaTGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCctgc                                                                     <  1:379362/125‑1 (MQ=255)                                                                                                             gCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTACATGCACAAGGaa                                     <  2:963549/150‑1 (MQ=255)                                                                                                             gCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTACATGCACAAGGaa                                     <  2:249449/150‑1 (MQ=255)                                                                                                                  cGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTACATGCACAAGGAAGTTgg                                <  2:1008594/150‑1 (MQ=255)                                                                                                                             gACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTACATGCACAAGGAAGTTGGGGCGAGCgaga                     <  1:65855/150‑1 (MQ=255)                                                                                                                               ccGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATaa                                                                                    >  2:488500/1‑85 (MQ=255)                                                                                                                               ccGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATaa                                                                                    <  1:488500/85‑1 (MQ=255)                                                                                                                                cGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTACATGCACAAGGAAGTTGGGGCGAGCGAGAACa                  >  1:1106966/1‑150 (MQ=255)                                                                                                                                  aaGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTACATGCACAAGGAAGTTGGGGCGAGCGAGAACATg                <  1:626485/150‑1 (MQ=255)                                                                                                                                  aaGACTTCGATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGGATACAGGCCGACCTACATGCACAAGGAAGTTGGGGCGAGCGAGAACATg                <  2:430999/150‑1 (MQ=255)                                                                                                                                         cTATTGCTGAAATTTTTGGGAAATACAAAAAGGcagcaatagaagtcttcggtcgaacaggctcgcttgccatcttcttttcgagctctagaaacacaggggtgtcttcgatcctggtgcgcaaatagaccgcgatgacgcccagaggag         <  1:990125‑M2/150‑118 (MQ=255)                                                                                                                                            ttGCTGAAATTTTTGGGAAATACAAAAAGGcagcaatagaagtcttcggtcgaacaggctcgcttgccatcttcttttcgagctctagaaacacaggg                                                          >  2:1004479‑M2/1‑30 (MQ=255)                                                                                                                                            ttGCTGAAATTTTTGGGAAATACAAAAAGGcagcaatagaagtcttcggtcgaacaggctcgcttgccatcttcttttcgagctctagaaacacaggg                                                          <  1:1004479‑M2/98‑69 (MQ=255)                                                                                                                                             tgctgcctttttgtatttcccaaaaatttcagcaatagaagtcttcggtcgaacaggctcgcttgccatcttcttttcgagctctagaaacacaggggtgtcttcgatcctggtgcgcaaatagaccgcgatgacgcccagaggagctgc     <  2:1020354‑M1/150‑146 (MQ=255)                                                                                                                                               cTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTACATGCACAAGGAAGTTGGGGCGAGCGAGAACATGTCATTGCTTgcgc   <  1:790824/150‑1 (MQ=255)                                                                                                                                                tgcctttttgtatttcccaaaaatttcagcaatagaagtcttcggtcgaacaggctcgcttgccatcttcttttcgagctctagaaacacaggggtatcatcggtcctggtgcgcaaatagaccgcgatgacgcccagaggagctgcgat  >  1:1092050‑M1/1‑2 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GGGTGGCGCGTTCCATTCCTGATCGCAGCTCCTCTGGGCGTCATCGCGGTCTATTTGCGCACCAGGATCGAAGACACCCCTGTGTTTCTAGAGCTCGAAAAGAAGATGGCAAGCGAGCCTGTTCGACCGAAGACTTCTATTGCTGAAATTTTTGGGAAATACAAAAAGGCAGCATTGTCGCTAGGGGTTTTGGTAGCAGCACTGAACATAACTTATTATATCCTGCTGGCATACATGCCGACCTACATGCACAAGGAAGTTGGGGCGAGCGAGAACATGTCATTGCTTGCGCC  >  NC_002947/5030004‑5030296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.