New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5385527 =	43 (0.990)	5 (0.130)	4/234	NT	11.7%	coding (210/1146 nt)	lldD	L‑lactate dehydrogenase
	?	NC_002947	5385567 =	36 (0.900)					coding (250/1146 nt)	lldD	L‑lactate dehydrogenase

TGTTCCACTACGCTGACGGCGGCGCCTACGCCGAGCACACCCTGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACTGTGTCGGTGTGCCCGATCGAAGAAG  >  NC_002947/5385379‑5385663                                                                                                                                                     |                                                                                                                                         tGTTCCACTACGCTGACGGCGGCGCCTACGCCGAGCACACCCTGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCa                                                                                                                                         >  1:150490/1‑150 (MQ=255)  gTTCCACTACGCTGACGGCGGCGCCTACGCCGAGCACACCCTGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCAt                                                                                                                                        >  1:147804/1‑150 (MQ=255)  cttgagtacatacagctggaaccacatcggccggttgatggcgggtgccacttcttcgatcgggcacaccgacacagtcgacatggtgaacgggatgccatgggccgccgctgcgcgtgcggcctgcacttcgccacggcgggcgtaCAt                                                                                                                                        <  1:497279‑M1/3‑1 (MQ=255)   ttgagtacatacagctggaaccacatcggccggttgatggcgggtgccacttcttcgatcgggcacaccgacacagtcgacatggtgaacgggatgccatgggccgccgctgcgcgtgcggcctgcacttcgccacggcgggcgtaCATg                                                                                                                                       <  2:958370‑M1/4‑1 (MQ=255)      cACTACGCTGACGGCGGCGCCTACGCCGAGCACACCCTGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCg                                                                                                                                    >  2:843663/1‑150 (MQ=255)          aCGCTGACGGCGGCGCCTACGCCGAGCACACCCTGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTgg                                                                                                                                <  2:363412/150‑1 (MQ=255)              tGACGGCGGCGCCTACGCCGAGCACACCCTGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCtt                                                                                                                            <  2:1065613/150‑1 (MQ=255)                aCGGCGGCGCCTACGCCGAGCACACCCTGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTgg                                                                                                                          <  2:1073823/150‑1 (MQ=255)                          cTACGCCGAGCACACCCTGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGCCGAAACCCTGAGCATGGCGGTGGGCAAGGCCCCAGGCgg                                                                                                                >  2:869512/1‑150 (MQ=255)                                      cacCCTGCGCCACAACGTCTCGGACCTGGAAGGGATGGCCCTTCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCAt                                                                                                    <  2:88854/150‑1 (MQ=255)                                         ccTGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTTGCCCCGGTCGGCCTCACCGGCATGTa                                                                                                 >  1:282132/1‑150 (MQ=255)                                          gcgggtgccacttcttcgatcgggcacaccgacacagtcgacatggtgaacgggatgccatgggccgccgctgcgcgtgcggcctgcacttcgccacggcgggcgtaCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTAc                                                                                                >  1:640072‑M1/108‑150 (MQ=255)                                           tGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTAcg                                                                                               >  1:546065/1‑150 (MQ=255)                                                         tcGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGaa                                                                                 >  1:28810/1‑150 (MQ=255)                                                         tcGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGaa                                                                                 >  2:299209/1‑150 (MQ=255)                                                              ccTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCa                                                                            <  2:147804/150‑1 (MQ=255)                                                               cTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCCGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAg                                                                           >  2:179677/1‑150 (MQ=255)                                                                tGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAgg                                                                          <  2:48776/150‑1 (MQ=255)                                                                           gCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACTGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCa                                                               <  2:258892/150‑1 (MQ=255)                                                                             ccTGCGCCAGCGCGTGCTGAAAAACATGTCCCAGCTCATGCTGGACAGCAGGGGGTTCGACGCAACGCTGAGCATGCCGGTGGCCTTGGTCCCGCTCGGCCTCGCCGGCCTGTAAGCCCGCCGGGGCGAAGGGCAGGCCGCCCGCGCAgc                                                             >  2:349672/1‑150 (MQ=255)                                                                                  acatggtgaacgggatgccatgggccgccgctgcgcgtgcggcctgcacttcgccacggcgggcgtaCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGc                                                                                                      <  1:229307‑M1/37‑1 (MQ=255)                                                                                  acatggggaacgggatgccatgggccgccgctgcgcgtgcggcctgcacttcgccacggcgggcgtaCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGc                                                                                                      >  2:229307‑M1/68‑104 (MQ=255)                                                                                    cAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGATGATACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGcc                                                      >  2:1122063/1‑150 (MQ=255)                                                                                    cAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGcc                                                      >  1:877796/1‑150 (MQ=255)                                                                                              tGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATcc                                            >  1:958370/1‑150 (MQ=255)                                                                                                  caacaTGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGtt                                        >  2:112903/1‑150 (MQ=255)                                                                                                   aacaTGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCGCGTTc                                       >  1:471563/1‑150 (MQ=255)                                                                                                    catgggccgccgctgcgcgtgcggcctgcacttcgccacggcgggcgtgCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGc                                                                                                      >  1:888078‑M1/50‑86 (MQ=255)                                                                                                    catgggccgccgctgcgcgtgcggcctgcacttcgccacggcgggcgtgCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGc                                                                                                      <  2:888078‑M1/37‑1 (MQ=255)                                                                                                     caTGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCAACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCAc                                     >  1:261814/1‑150 (MQ=255)                                                                                                      aTGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTgg                                                                                     >  1:1129325/1‑101 (MQ=255)                                                                                                      aTGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTgg                                                                                     <  2:1129325/101‑1 (MQ=255)                                                                                                          ccGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGt                                >  2:452055/1‑150 (MQ=255)                                                                                                           cGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGt                                <  1:65039/149‑1 (MQ=255)                                                                                                           cGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGt                                >  2:65039/1‑149 (MQ=255)                                                                                                               cTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACt                           <  1:119441/150‑1 (MQ=255)                                                                                                                   gCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCgg                                                                                                                >  1:590157/1‑61 (MQ=255)                                                                                                                   gCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCgg                                                                                                                <  2:590157/61‑1 (MQ=255)                                                                                                                   gCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACTgtgt                       <  2:28810/150‑1 (MQ=255)                                                                                                                        gAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACTGTGTCGgtg                  >  2:461512/1‑150 (MQ=255)                                                                                                                             cAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGc                                                                                                               <  1:990937/52‑1 (MQ=255)                                                                                                                             cAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGc                                                                                                               >  2:990937/1‑52 (MQ=255)                                                                                                                             cAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACTGTGTCGGTGTGccc             >  2:100478/1‑150 (MQ=255)                                                                                                                               aGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACTGTGTCGGTGTGCCCGa           >  1:104468/1‑150 (MQ=255)                                                                                                                                    ttCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACTGTGTCGGTGTGCCCGGTCgtg      <  1:869512/150‑3 (MQ=255)                                                                                                                                       gacgaAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACTgtgt                       >  1:29103/1‑130 (MQ=255)                                                                                                                                       gacgaAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACTgtgt                       <  2:29103/130‑1 (MQ=255)                                                                                                                                        acgaAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACTGTGTCGGTGTGCCCGATCGaagaag  >  2:594798/1‑150 (MQ=255)                                                                                                                                              cccTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAgc                                                             >  2:757700/1‑85 (MQ=255)                                                                                                                                              cccTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAgc                                                             <  1:757700/85‑1 (MQ=255)                                                                                                                                               ccTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCa                                                    >  2:151654/1‑93 (MQ=255)                                                                                                                                               ccTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCa                                                    <  1:151654/93‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                         TGTTCCACTACGCTGACGGCGGCGCCTACGCCGAGCACACCCTGCGCCACAACGTCTCGGACCTGGCCGGCATCGCCCTGCGCCAGCGCGTGCTGAACAACATGTCCGAGCTCAGCCTGGAAACCAAGCTGTTCGACGAAACCCTGAGCATGCCGGTGGCCTTGGCCCCGGTCGGCCTCACCGGCATGTACGCCCGCCGTGGCGAAGTGCAGGCCGCACGCGCAGCGGCGGCCCATGGCATCCCGTTCACCATGTCGACTGTGTCGGTGTGCCCGATCGAAGAAG  >  NC_002947/5385379‑5385663

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.