New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6136887	37 (0.850)	4 (0.100)	4/234	NT	10.2%	coding (1172/1410 nt)	copS	copper sensor protein
	?	NC_002947	= 6136925	36 (0.900)					coding (1210/1410 nt)	copS	copper sensor protein

AGGGAAAGGTGTCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGA  >  NC_002947/6136738‑6137032                                                                                                                                                      |                                                                                                                                                  aGGGAAAGGTGTCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAA                                                                                                                                                   <  1:369589‑M1/150‑1 (MQ=255)        ggTGTCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCggg                                                                                                                                            >  2:1027386/1‑150 (MQ=255)         gtgtCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTATCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCgggg                                                                                                                                           >  2:357029/1‑150 (MQ=255)           gtCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCa                                                                                                                                         >  1:626508/1‑150 (MQ=255)                ctcCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCAt                                                                                                                                    >  2:415059/1‑150 (MQ=255)                   cGGAGACAGGCTCATGATCGCCGGAGGAACAGCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGa                                                                                                                                 <  1:573/150‑1 (MQ=255)                          aGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATACCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCacaa                                                                                                                          >  2:72828/1‑150 (MQ=255)                          aGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCCAATGGCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCacaa                                                                                                                          <  2:1054112/150‑1 (MQ=255)                              tCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAAcaca                                                                                                                      <  1:1091691/150‑1 (MQ=255)                                aTGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATc                                                                                                                    <  2:626508/150‑1 (MQ=255)                                  gATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAAtcttgttgatgtgttgtgggtcaatggttgccc                                                                                                                  >  2:844313‑M1/1‑117 (MQ=255)                                   aTCGCCCGGGCTGTATCCAATATGCTCTCGAAGGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGACCAAAAACGGCGGGGCAACCATTGACCCACAACACATcaac                                                                                                                 <  2:376091/150‑1 (MQ=255)                                         cGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGa                                                                                                                                 <  2:1053935/128‑1 (MQ=255)                                         cGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGa                                                                                                                                 >  1:1053935/1‑128 (MQ=255)                                            gCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAttttt                                                                                                        >  1:415059‑M2/1‑145 (MQ=255)                                              tGTATACAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttga                                                                                                      <  1:668921‑M2/150‑8 (MQ=255)                                                  tCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAAtcttgttgatgtgttgtgggtcaatggttgccccgccgtttttgatcgt                                                                                                  <  1:844313‑M1/150‑50 (MQ=255)                                                        atTCTCTCGCCTGCCGCTCGATACCCGCCGGGCTAAAGCGCGATCCCGGAAGAAATTCATCAAGCCGCAAACAAAGCACCCCTCACTCCCACAAACAGCGGGCCAACCATTGACCCACAACACAACAACAAGATTTTTGATCGCTCCTAc                                                                                            >  1:259616/1‑150 (MQ=255)                                                        atTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTAc                                                                                            >  1:259615/1‑150 (MQ=255)                                                                   tGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAacac                                                                                                                       >  1:218142/1‑112 (MQ=255)                                                                   tGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAacac                                                                                                                       <  2:218142/112‑1 (MQ=255)                                                                      cGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAATCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGc                                                                              >  2:433111/1‑150 (MQ=255)                                                                      cGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGACGCAGACAAGGTGACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCAGGCCGACCCGGc                                                                              >  2:616658/1‑150 (MQ=255)                                                                       gTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCa                                                                             >  2:78853/1‑150 (MQ=255)                                                                               cacGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCgaga                                                                     >  1:337550/1‑150 (MQ=255)                                                                                     ggacggaAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAgggggg                                                               >  2:925091/1‑150 (MQ=255)                                                                                      gacggaACCCAGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGCTTTTTGATCGCTGCTGCCGGGCCGACCCGGCAAGGCGAGAGGGGGGa                                                              <  1:1017641/150‑1 (MQ=255)                                                                                               gggATCTCGGTAGAACCTCAGCAATCCGCAGACAAGGCAACCCCCACGATCAAAACAAATGCGGCAACCATTGCCACGAAAAGCAGCTGCAACTTGTTGGAATGGCTGTTCGTGGCCTTCCCTGCAAGGCGAGAGGGGGGACCTAGCAAt                                                     <  2:971486/150‑1 (MQ=255)                                                                                                  aTCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCt                                                  >  1:456515/1‑150 (MQ=255)                                                                                                   tctcTGTAGACTGTCAGCAAGCCCCACACTAGGTAACCCTCACTATAAAAGACGGCGGGGCAACCATTGACCCACCACACTTCAACGAGATGTTCGCTCGCTTCTACCGGGCCGTCCCGGCAAGGTGAGAGGGGGGACATAGctctggtg                                                 <  2:259616/150‑8 (MQ=255)                                                                                                   tctcGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACACCACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCTAGAGGGGGGACCTAGCAATGCTg                                                 <  2:553426/150‑1 (MQ=255)                                                                                                   tctcGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTg                                                 <  1:1027386/150‑1 (MQ=255)                                                                                                   tctcGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTg                                                 <  2:259615/150‑1 (MQ=255)                                                                                                             aaTTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAGAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttga                                                                                                      <  1:925140‑M2/87‑8 (MQ=255)                                                                                                             aaTTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAGAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttga                                                                                                      >  2:925140‑M2/1‑80 (MQ=255)                                                                                                             aaTTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAAtcttgttgatgtgttgtgggtcaatggttgccccgccgtttttgat                                                                                                     <  1:765140‑M1/88‑47 (MQ=255)                                                                                                             aaTTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAAtcttgttgatgtgttgtgggtcaatggttgccccgccgtttttgat                                                                                                     >  2:765140‑M1/1‑42 (MQ=255)                                                                                                                   gCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAGCGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTg                                                 >  2:594533/1‑134 (MQ=255)                                                                                                                   gCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTg                                                 <  1:594533/134‑1 (MQ=255)                                                                                                                    cAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCAtt                                <  2:668921/150‑1 (MQ=255)                                                                                                                      aGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTAc                              >  2:448668/1‑150 (MQ=255)                                                                                                                         cGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCg                           >  2:878174/1‑150 (MQ=255)                                                                                                                                  ggTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGt                  >  2:1120217/1‑150 (MQ=255)                                                                                                                                       cccTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAg             <  1:616658/150‑1 (MQ=255)                                                                                                                                          tCACGATCAAAAACGGCGGGGCAACCATTGCCCCACAACACAGCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGcac          <  1:72828/150‑1 (MQ=255)                                                                                                                                          tCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGcac          >  1:259770/1‑150 (MQ=255)                                                                                                                                            aCGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttgatcgtgagggttaccttgtctgcggcttgctgaatttctaccgagatcccgcttccgtccggcgtgtatcgaacggcattcgagagaatattgga        <  1:844313‑M2/150‑102 (MQ=255)                                                                                                                                               aTCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttgatcgtgagggttaccttgtctgcggcttgctgaatt                                                                   >  2:765140‑M2/1‑46 (MQ=255)                                                                                                                                               aTCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGAtttttgatcgtgagggttaccttgtctgcggcttgctgaatt                                                                   <  1:765140‑M2/88‑43 (MQ=255)                                                                                                                                                tCAAAAAtcttgttgatgtgttgtgggtcaatggttgccccgccgtttttgatcgtgagggttaccttgtctgcggcttgctgaatttctaccgagatcccgcttccgtccggcgtgtatcgaacggcattcgagagaatattgtataca    <  1:668921‑M1/150‑144 (MQ=255)                                                                                                                                                tCAAAAAtcttgttgatgtgttgtgggtcaatggttgccccgccgtttctgatcgtgagggttaccttgtctgcggcttgctgaatt                                                                   >  2:925140‑M1/1‑7 (MQ=255)                                                                                                                                                tCAAAAAtcttgttgatgtgttgtgggtcaatggttgccccgccgtttctgatcgtgagggttaccttgtctgcggcttgctgaatt                                                                   <  1:925140‑M1/87‑81 (MQ=255)                                                                                                                                                  aaaaatcttgttgatgtgttgtgggtcaatggttgccccgccgtttttgatcgtgagggttaccttgtctgcggcttgctgaatttctaccgagatcccgcttccgtccggcgtgtatcgaacggcattcgagagaatattggatacagc  >  1:415059‑M1/1‑5 (MQ=255)                                                                                                                                                      |                                                                                                                                                  AGGGAAAGGTGTCATCTCCGGAGACAGGCTCATGATCGACCGAGCTGTATCCAATATTCTCTCGAATGCCGTTCGATACACGCCGGACGGAAGCGGGATCTCGGTAGAAATTCAGCAAGCCGCAGACAAGGTAACCCTCACGATCAAAAACGGCGGGGCAACCATTGACCCACAACACATCAACAAGATTTTTGATCGCTTCTACCGGGCCGACCCGGCAAGGCGAGAGGGGGGACCTAGCAATGCTGGGCTTGGTCTGGCCATTACCCGCTCCATCGTCAAAGCACATGATGGA  >  NC_002947/6136738‑6137032

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.