New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	200753 =	32 (0.740)	6 (0.150)	4/242	NT	13.3%	coding (6259/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	202753 =	48 (1.160)					coding (8259/26049 nt)	PP_0168	putative surface adhesion protein

GAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGAACCTGGCGCTGGGCGGTGCCGC  >  NC_002947/202613‑202902                                                                                                                                             |                                                                                                                                                      gAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGcc                                                                                                                                              <  1:1083790/150‑1 (MQ=255)          atCGTCAAAGTAACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAAcc                                                                                                                                     >  1:93402/1‑150 (MQ=255)                aaaGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAgcgcg                                                                                                                               >  2:253497/1‑150 (MQ=255)                   gtgatgccgaggctgatctggcccgcatcctgatagacgtcatcgccttgcgcgtcgtgggtgtacggcgcgctggtttcgccagccttgatggtgacctgagcgttgttgctcagggtcacCATCAAGGCTGGCGAAACCa                                                                                                                                    >  1:1031125‑M2/123‑142 (MQ=255)                   gtgatgccgaggctgatctggcccgcatcctgatagacgtcatcgccttgcgcgtcgtgggtgtacggcgcgctggtttcgccagccttgatggtgacctgagcgttgttgctcagggtcacCATCAAGGCTGGCGAAACCa                                                                                                                                    <  2:1031125‑M2/20‑1 (MQ=255)                   gTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCg                                                                                                                            >  2:18332/1‑150 (MQ=255)                   gTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCg                                                                                                                            <  2:351694/150‑1 (MQ=255)                       cTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTaca                                                                                                                        <  2:252805/150‑1 (MQ=255)                                   aCCAGACCTCGGTGGCCGATAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTgcgc                                                                                                            >  1:317316/1‑150 (MQ=255)                                     cAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAg                                                                                                          >  1:174756/1‑150 (MQ=255)                                     cAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTAGCAGGCGGCCTGGGCGTGACCCGGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCAGAACTTACACCCACGCTGCGCAg                                                                                                          >  1:607595/1‑150 (MQ=17)                                          cTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGtga                                                                                                     >  2:1046130/1‑150 (MQ=255)                                                               aCCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTgg                                                                                >  2:574975/1‑150 (MQ=255)                                                                ccGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGc                                                                               >  1:559488/1‑150 (MQ=255)                                                                       tCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCa                                                                        >  1:948022/1‑150 (MQ=255)                                                                         aCCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGc                                                                      >  1:50819/1‑150 (MQ=255)                                                                           cGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCTTACACCCACGCTGCGCAGGGTGATGACGtt                                                                                              >  1:852763/1‑124 (MQ=255)                                                                           cGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGtt                                                                                              <  2:852763/124‑1 (MQ=255)                                                                                atatCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGcc                                                                              <  1:445779/135‑1 (MQ=255)                                                                                atatCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGcc                                                                              >  2:445779/1‑135 (MQ=255)                                                                                 tatCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCAt                                                              >  1:1112909/1‑150 (MQ=255)                                                                                   tCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAg                                                                                                                                   <  1:880606/79‑1 (MQ=255)                                                                                   tCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAg                                                                                                                                   >  2:880606/1‑79 (MQ=255)                                                                                   tCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGAt                                                                          >  2:520457/1‑136 (MQ=255)                                                                                   tCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACAATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGAt                                                                          <  1:520457/136‑1 (MQ=255)                                                                                     aaCACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTAc                                                                                           >  1:174014/1‑117 (MQ=255)                                                                                     aaCACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTAc                                                                                           <  2:174014/117‑1 (MQ=255)                                                                                     aaCACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCAcc                                                          >  2:101020/1‑150 (MQ=40)                                                                                     aaCACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCAcc                                                          >  2:679437/1‑150 (MQ=40)                                                                                             cTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGt                                                  >  2:1080001/1‑150 (MQ=34)                                                                                              ttGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTg                                                 <  2:948022/150‑1 (MQ=33)                                                                                                   ccACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGTCTGGGCATCACCTCGGCGGTGGACGc                                            >  1:504688/1‑150 (MQ=17)                                                                                                    cACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGcc                                           >  2:485539/1‑150 (MQ=32)                                                                                                      cGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCAc                                         >  2:978854/1‑150 (MQ=32)                                                                                                              tggtgacctgggcgttgttgctcagggtcacCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTg                                                                                                               >  1:922772‑M2/32‑72 (MQ=255)                                                                                                              tggtgacctgggcgttgttgctcagggtcacCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTg                                                                                                               <  2:922772‑M2/41‑1 (MQ=255)                                                                                                              tggtgacctgggcattgttgctcagggtcacCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCt                                                                    >  1:423871‑M2/32‑115 (MQ=255)                                                                                                              tggtgacctgggcattgttgctcagggtcacCATCAAGGCCGGCGAGACCAGCGCGCCGTACACCCACGCTGCGCAGGGCGATGACGTTTACAACGATGCTGGCCAGATCAGCCt                                                                    <  2:423871‑M2/84‑1 (MQ=255)                                                                                                                gTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGa                                                                           >  1:503691/1‑106 (MQ=33)                                                                                                                gTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGa                                                                           <  2:503691/106‑1 (MQ=33)                                                                                                                   aCCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTc                            >  1:913279/1‑150 (MQ=35)                                                                                                                    ccgtGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGc                                   <  1:229176/139‑1 (MQ=17)                                                                                                                    cccTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGc                                   >  2:229176/1‑142 (MQ=32)                                                                                                                    cccTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCg                           <  2:174756/150‑1 (MQ=35)                                                                                                                    cccTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCg                           >  1:1067383/1‑150 (MQ=35)                                                                                                                     ccTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCga                          <  1:70451/150‑1 (MQ=34)                                                                                                                        gAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGaa                       <  1:552601/150‑1 (MQ=35)                                                                                                                            aacaacGCCCAGGTCACCATCAAGGCGGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGAACCTg                   >  1:870961/1‑150 (MQ=17)                                                                                                                             acaacGCCTAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGAGGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGAACCTgg                  <  2:607595/150‑1 (MQ=25)                                                                                                                             acaacGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGAACCTgg                  <  2:913279/150‑1 (MQ=35)                                                                                                                              caacGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCtt                             <  2:403473/138‑1 (MQ=34)                                                                                                                              caacGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCtt                             >  1:403473/1‑138 (MQ=34)                                                                                                                              caacGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGGACCTGgc                 >  1:65116/1‑150 (MQ=37)                                                                                                                                 cGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGAACCTGGCGCt              >  1:1112967/1‑150 (MQ=39)                                                                                                                                           acCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGAACCTGGCGCTGGGCGGTGcc    >  1:1066369‑M2/3‑150 (MQ=255)                                                                                                                                             cATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGAACCTGGCGCTGGGCGGTGCcgc  >  2:881809/1‑150 (MQ=39)                                                                                                                                             cATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGAACCTGGCGCTGGGCGGTGCcgc  >  1:835076/1‑150 (MQ=38)                                                                                                                                             |                                                                                                                                                      GAAGGCGATATCGTCAAAGTCACTATTACTGCTGACCAGACCTCGGTGGCCGAGAACGTCAAACCGACCTTCACCGTACATATCAACACCGCCTTGGCCCACGACCTGGTCGTGACCCTGAGCAACAACGCCCAGGTCACCATCAAGGCCGGCGAAACCAGCGCGCCGTACACCCACGCTGCGCAGGGTGATGACGTTTACAACGACGCTGGCCAGATCAGCCTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCAACCTTCGAGAACCTGGCGCTGGGCGGTGCCGC  >  NC_002947/202613‑202902

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.