New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	259838 =	52 (1.200)	3 (0.070)	3/238	NT	6.6%	coding (1372/1407 nt)	PP_0207	nitrate ABC transporter substrate‑binding protein
	?	NC_002947	259875 =	36 (0.890)					intergenic (+2/‑14)	PP_0207/PP_0208	nitrate ABC transporter substrate‑binding protein/nitrate ABC transporter permease

CCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACGTTCACCTATGTCCCTACACCCAAG  >  NC_002947/259728‑260020                                                                                                                                                    |                                                                                                                                                  ccAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCgg                                                                                                                                                 >  2:305743/1‑150 (MQ=255)   ggtccattttcacgtttgccgccacttgccagaacagcaggcaggccagcagcgacgccaggcgcaccggccagcgcttgaggttgcgggtcatgtcggtgcctcccgGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                                                               >  2:297766‑M1/109‑150 (MQ=255)   aaCCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                                                               <  2:989134/150‑1 (MQ=255)   aaCCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGCCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGGCGCCCAGCGCTGACCGGGa                                                                                                                                               >  2:244630/1‑150 (MQ=255)      cAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGc                                                                                                                                            >  1:635724/1‑150 (MQ=255)           cTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGa                                                                                                                                       <  1:115996/150‑1 (MQ=255)            tGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGAc                                                                                                                                      <  2:330469/150‑1 (MQ=255)                    gcgcAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTGAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGGGGCACCGACATGACCCg                                                                                                                              >  2:786289/1‑150 (MQ=255)                        aaCGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAAc                                                                                                                          >  1:413949/1‑150 (MQ=255)                                           cggcATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAgcgc                                                                                                                 >  2:652809/1‑140 (MQ=255)                                           cggcATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAgcgc                                                                                                                 <  1:652809/140‑1 (MQ=255)                                            ggcATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGAATCGCAACCTCAAGCGCTGGCCGGTgcg                                                                                                      >  1:280429/1‑150 (MQ=255)                                                    tGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGt                                                                                              >  2:355608/1‑150 (MQ=255)                                                       tCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGAc                                                                                                                                 >  2:726918/1‑112 (MQ=255)                                                       tCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGAc                                                                                                                                 <  1:726918/112‑1 (MQ=255)                                                         aaGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                                                               <  2:155511/96‑1 (MQ=255)                                                         aaGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                                                               >  1:155511/1‑96 (MQ=255)                                                         aaGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCgctg                                                                                         >  1:654170/1‑150 (MQ=255)                                                            gACCAGGCCGATCAGTCTGCCAAGGTCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGGCGctgctg                                                                                      >  2:592967/1‑150 (MQ=255)                                                              ccAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGgc                                                                                    <  1:655585/150‑1 (MQ=255)                                                                 ggCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGgcctg                                                                                 >  1:215533/1‑150 (MQ=255)                                                                  gCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGgcctgc                                                                                <  1:785310/150‑1 (MQ=255)                                                                     gAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGcctgactg                                                                             <  2:1127586/150‑1 (MQ=255)                                                                             tGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGCCCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTg                                                                     <  1:572873/150‑1 (MQ=255)                                                                                cAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCa                                                                  >  1:77679/1‑150 (MQ=255)                                                                                 aaGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCaa                                                                 <  2:123130/150‑1 (MQ=255)                                                                                      ccATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTggc                                                            >  2:934440/1‑150 (MQ=255)                                                                                       cATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTggcg                                                           <  2:654170/150‑1 (MQ=255)                                                                                        aTGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGTGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTggcgg                                                          <  2:486950/150‑1 (MQ=255)                                                                                        aTGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTggcgg                                                          <  2:413949/150‑1 (MQ=255)                                                                                              gCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                                                               <  1:955217/59‑1 (MQ=255)                                                                                              gCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGa                                                                                                                                               >  2:955217/1‑59 (MQ=255)                                                                                                 aGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGa                                                 <  2:635724/150‑1 (MQ=255)                                                                                                      cTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATg                                            <  1:724964/150‑1 (MQ=255)                                                                                                         gACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGAc                                         >  1:712613/1‑150 (MQ=255)                                                                                                          tcccggtcagcgctgggcgaccagcttctggttggcgctgacCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGAcc                                        >  2:297766‑M2/43‑150 (MQ=255)                                                                                                             tCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTg                                     <  1:305743/150‑1 (MQ=255)                                                                                                             tCGTCAGCGCCAACCAGAAGCTGGGCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAATCGTGATGCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTCTTCTGGCAAGTGGCGGCAAACCTGAAAATGGACCTTg                                     <  2:534226/150‑1 (MQ=255)                                                                                                                tcagcgctgggcgaccagcttctggttggcgctgacCGGGAGGCACCGACATGACCCGCAAc                                                                                                                          <  2:322657‑M2/26‑1 (MQ=255)                                                                                                                tcagcgctgggcgaccagcttctggttggcgctgacCGGGAGGCACCGACATGACCCGCAAc                                                                                                                          >  1:322657‑M2/37‑62 (MQ=255)                                                                                                                   GCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTctgc                               >  1:121860‑M1/1‑150 (MQ=255)                                                                                                                       cAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCTTGTTGTTGTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGAc                           <  2:155843/150‑1 (MQ=255)                                                                                                                        aaCCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACg                          >  1:428525/1‑150 (MQ=255)                                                                                                                            aGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACGTTCa                      >  1:318541/1‑150 (MQ=255)                                                                                                                             gAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACGTTCAc                     <  2:804517/150‑1 (MQ=255)                                                                                                                                gCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACGTTCACCTa                  <  1:671725/150‑1 (MQ=255)                                                                                                                                    gTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACGTTCACCTATGTc              >  2:235910/1‑150 (MQ=255)                                                                                                                                    gTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACGTTCACCTATGTc              >  1:473937/1‑150 (MQ=255)                                                                                                                                        cccAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACGTTCACCTATGTCCCTa          <  1:235910/150‑1 (MQ=255)                                                                                                                                         ccAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACGTTCACCTATGTCCCTac         >  1:695901/1‑150 (MQ=255)                                                                                                                                                tgacCGGGAGGCACCGACATGACCCGCAAACTCAAGCGATGGCCGGTGCGCCTGGCGTAGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTTGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACGTTCACCTATGTCCCTACACCCAAg  >  2:971824‑M2/5‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CCAACCAGGCCTGGTTCGTGCGCAACGGTAAAGGCGAACTGGCGGCATTCCTGCTCAAGGACCAGGCCGAGCAGTATGCCAAGGCCCATGGTGGCGAGGCGCTGGACTTCGTCAGCGCCAACCAGAAGCTGGTCGCCCAGCGCTGACCGGGAGGCACCGACATGACCCGCAACCTCAAGCGCTGGCCGGTGCGCCTGGCGTCGCTGCTGGCCTGCCTGCTGTTCTGGCAAGTGGCGGCAAACGTGAAAATGGACCTTGGTCTGCTGACGTTCACCTATGTCCCTACACCCAAG  >  NC_002947/259728‑260020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.