New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1690686	39 (0.900)	3 (0.070)	3/238	NT	7.5%	coding (187/1146 nt)	ydcS	polyamine ABC transporter, periplasmic polyamine‑binding protein
	?	NC_002947	= 1690692	38 (0.940)					coding (181/1146 nt)	ydcS	polyamine ABC transporter, periplasmic polyamine‑binding protein

GATCGGCTGTACGCGCTTGCCTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGCGCCGGCCAGCATGGCGCAG  >  NC_002947/1690543‑1690840                                                                                                                                                        |                                                                                                                                                      gATCGGCTGTACGCGCTTGCCTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTc                                                                                                                                                       <  1:750174/150‑1 (MQ=255)         gTACGCGCTTGCCTGCAATCAGCCGCAGCGATGCATCCCGCTAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCgaaaccgg                                                                                                                                               >  1:850977‑M2/1‑142 (MQ=255)          tACGCGCTTGCCTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGt                                                                                                                                              >  1:760633/1‑150 (MQ=255)                     cTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCCTCAGGC‑G‑CAACCTCCACCCAAATCCCGAGCCTGTGGTCACGCTGCCCTTGCAGCCGGTTTCCTTTTCGCAACAGATCACCCAATCGt                                                                                                                                   >  1:252776/1‑150 (MQ=255)                     cTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGCAACCGATCACCCAATCGt                                                                                                                                   >  2:960371/1‑150 (MQ=255)                     cTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGt                                                                                                                                   >  2:988081/1‑150 (MQ=255)                     cTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGt                                                                                                                                   <  1:759931/150‑1 (MQ=255)                      tGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTa                                                                                                                                  >  2:787529/1‑150 (MQ=255)                       gCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAg                                                                                                                                 <  2:99933/150‑1 (MQ=255)                          aTCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCGAAAAGgaaaccggctgcaaggtcagcgtga                                                                                                                              >  1:649160‑M2/1‑125 (MQ=255)                               ccGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTc                                                                                                                         <  2:1128639/150‑1 (MQ=255)                                 gCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGc                                                                                                                       >  1:798820/1‑150 (MQ=255)                                            tCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGt                                                                                                            >  1:168469/1‑150 (MQ=255)                                                ccGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGa                                                                                                        <  2:981157/150‑1 (MQ=255)                                                     gCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTaa                                                                                                   <  2:798820/150‑1 (MQ=255)                                                             cAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGCTGTAACCGGGCCa                                                                                           >  1:613734/1‑150 (MQ=255)                                                              aGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCAGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAg                                                                                          >  1:839648/1‑150 (MQ=255)                                                                gTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGc                                                                                        >  1:783892/1‑150 (MQ=255)                                                                       ccgccCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGc                                                                                                                               >  1:26516/1‑104 (MQ=255)                                                                       ccgccCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGc                                                                                                                               <  2:26516/104‑1 (MQ=255)                                                                         gccCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTc                                                                               <  1:236306/150‑1 (MQ=255)                                                                          cccTTGGTCATACAGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTcc                                                                              <  1:499568/150‑1 (MQ=255)                                                                                 tcatcaGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCGGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTTGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑Gcc                                                                      >  2:1091831/1‑150 (MQ=255)                                                                                    tcaGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTGACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCt                                                                   >  1:125414/1‑150 (MQ=255)                                                                                       ggCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGc                                                                <  1:196619/150‑1 (MQ=255)                                                                                          tGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGt                                                             >  1:288315/1‑150 (MQ=255)                                                                                             ccATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTccc                                                          >  1:979315/1‑150 (MQ=255)                                                                                              cATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTcccc                                                         <  1:787529/150‑1 (MQ=255)                                                                                                    gTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGt                                                             >  1:1017114/1‑140 (MQ=255)                                                                                                    gTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGt                                                             <  2:1017114/140‑1 (MQ=255)                                                                                                    gTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGc                                                   >  1:306276/1‑150 (MQ=255)                                                                                                     tCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGcc                                                  >  1:453909/1‑150 (MQ=255)                                                                                                        gAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACACAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCCAGCCCAGACGTGCAGGC‑GGCCCTCGCCGTCCCCCAGGGCCTTg                                               >  2:365952/1‑150 (MQ=255)                                                                                                              gcg‑gcC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGtt                                         >  1:402209/1‑150 (MQ=255)                                                                                                                   cc‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTCGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTcgg                                     <  2:564311/150‑1 (MQ=255)                                                                                                                              gCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTAGACTGATTTGGGCCAGGCGACGATGAACAGACAGAGCCT‑GCCGGCCCCCATGGCCTTGAGCGTTTCGGCGGCCTGCAg                           >  1:1097139/1‑150 (MQ=255)                                                                                                                                tGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGTCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGc                         >  2:378974/1‑150 (MQ=255)                                                                                                                                 gACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCt                        <  1:964543/150‑1 (MQ=255)                                                                                                                                  aCCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTg                       <  2:252776/150‑1 (MQ=255)                                                                                                                                   ccTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTgg                      >  1:315064/1‑150 (MQ=255)                                                                                                                                          gCCGGTTTCCTTTTCgaaaccggctgcaaggtcagcgtgaaaacgg                                                                                                                        >  1:736501‑M2/1‑15 (MQ=255)                                                                                                                                          gCCGGTTTCCTTTTCgaaaccggctgcaaggtcagcgtgaaaacgg                                                                                                                        <  2:736501‑M2/46‑32 (MQ=255)                                                                                                                                           ccGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGCGCCGGcc              >  1:883555/1‑150 (MQ=255)                                                                                                                                                 tCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTGACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGCGCCGGCCAGCATg        <  2:125414/150‑1 (MQ=255)                                                                                                                                                       tCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGCGCCGGCCAGCATGGCGCAg  <  2:1102005/150‑1 (MQ=255)                                                                                                                                                       tCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGCGCCGGCCAGCATGGCGCAg  <  2:543460/150‑1 (MQ=255)                                                                                                                                                        |                                                                                                                                                      GATCGGCTGTACGCGCTTGCCTGCAATCAGCCGCAGCGATGCATCGCCCGAGGCGGTGACCAGGTCATAGCCGCCCTTGGTCATCAGGCTGACCATCTCGTCCGAGGTGGCG‑GCC‑GTTTTCACGCTGACCTTGCAGCCGGTTTCCTTTTCGAAACCGGTCACCCAATCGTAGGCCTTGTCGCTTTCACCGCGTTCGATGTAACCGGGCCAGGCGACGATGTCCAGGC‑GCCCCTCGCCGTCCCCCAGGGCCTTGAGCGTTTCGGCGGCCTGCAGGCTGGCGCCGGCCAGCATGGCGCAG  >  NC_002947/1690543‑1690840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.