New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2645464 | 27 (0.620) | 3 (0.070) | 3/236 | NT | 10.2% | coding (1893/2499 nt) | PP_2316 | ABC transporter permease |
? | NC_002947 | = 2645496 | 28 (0.700) | coding (1861/2499 nt) | PP_2316 | ABC transporter permease |
CAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGCAACTCGGC > NC_002947/2645350‑2645634 | cAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGATGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgt > 1:293700‑M2/1‑147 (MQ=255) cAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgt < 2:402495‑M2/150‑4 (MQ=255) aGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGt < 1:402495/150‑1 (MQ=255) cAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCAt < 2:598592/150‑1 (MQ=255) ggTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCt < 1:998230/150‑1 (MQ=255) cGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAg < 1:279133/150‑1 (MQ=255) ggCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAgg < 1:1033678/150‑1 (MQ=255) ggCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCCCCCATCTGCAGTTTCAgg > 2:264083/1‑150 (MQ=255) tGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGcc > 1:476656/1‑150 (MQ=255) gCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGCCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGtt > 2:463525/1‑150 (MQ=255) gCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGACCCGttacac < 2:884476/150‑5 (MQ=255) gAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCCCCGa > 2:255287/1‑150 (MQ=255) gTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCggg < 1:600392/150‑1 (MQ=255) aaGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCgggg > 1:1007364/2‑150 (MQ=255) gAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGGTCCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGc < 1:67366/150‑1 (MQ=255) aaGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCt < 1:45747/150‑1 (MQ=255) tGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCACGGGGATATCGTTGTCGGCTGGCa < 2:272159/150‑1 (MQ=255) ccAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCAAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGc > 1:691272/1‑150 (MQ=255) aCGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGccac < 2:476656/150‑1 (MQ=255) aCGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGccac > 1:339464/1‑150 (MQ=255) gcAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGtt > 2:1017920/1‑72 (MQ=255) gcAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGtt < 1:1017920/72‑1 (MQ=255) gctgctGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgtcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagctt < 1:157333‑M2/150‑109 (MQ=255) ctgctgACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgtcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagcttc < 1:80136‑M2/150‑110 (MQ=255) tgACGCGGGCCGGGCGCTGCTGGCCGCCCCTATCGGACGTCTGCAGGTCGCCCGGCTGCAGTTTCTTGCTCCTGCACAGTTGCGCCTCCGCCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCa < 1:255287/150‑1 (MQ=255) gACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAAcgtcagcagcctgcgcaacgtgcattgggacagcttccagccgaacttctacatgatcttccagcctggcacgctgcaggggctgccgaccacttacctgaccagcttctacct > 2:80136‑M2/1‑36 (MQ=255) gggCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGt < 2:691272/150‑1 (MQ=255) gcgcTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGtt > 1:547719/1‑99 (MQ=255) gcgcTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGtt < 2:547719/99‑1 (MQ=255) gctgctGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCgg < 2:28185/150‑1 (MQ=255) tgctgGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCAGCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGc > 1:521153/1‑150 (MQ=255) tgctgGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGc > 2:21971/1‑150 (MQ=255) cgccAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGCAACTcgg > 1:224235/1‑150 (MQ=255) gccAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGCAACTcggc > 2:959314/1‑150 (MQ=255) | CAGGTAGAAGCTGGTCAGGTAAGTGGTCGGCAGCCCCTGCAGCGTGCCAGGCTGGAAGATCATGTAGAAGTTCGGCTGGAAGCTGTCCCAATGCACGTTGCGCAGGCTGCTGACGCGGGCCTGGCGCTGCTGGCCGCCAATATCGAACGTCAGCAGGTCGCCCATCTGCAGTTTCAGGCTGCTGGCCAGTTCCGCCTCCACCGAAACCCCGGGGATATCGTTGTCGGCTGGCAAGGCTGGCCACCAACTGCCTGCGGTCAGCACGTTGCCTTCGGGCAACTCGGC > NC_002947/2645350‑2645634 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |