New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 3516639 =38 (0.880)3 (0.070) 6/244 NT 7.3% intergenic (+636/‑499) PP_5576/PP_5578 hypothetical protein/hypothetical protein
?NC_002947 3516657 = 40 (0.960)intergenic (+654/‑481) PP_5576/PP_5578 hypothetical protein/hypothetical protein

GCCGCAAGACCACCTACGAATATCATCACCTGACCACGCTGGTGAACCAGGTCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGACGAGCGCCA  >  NC_002947/3516514‑3516802
                                                                                                                                                |                                                                                                                                                 
gCCGCAAGACCACCTACGAATATCATCACCTGACCACGCTGGTGAACCAGGTCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGa                                                                                                                                             >  2:377977/1‑150 (MQ=255)
       gACCACCTACGAATATCATCACCTGACCACGCTGGTGAACCAGGTCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGa                                                                                                                                      >  2:218399/1‑150 (MQ=255)
                  aaTATCATCACCTGACCACGCTGGTGAACCAGGTCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACAGAGCACCTGAACAGCGATGACGACCTGc                                                                                                                           >  2:1106332/1‑150 (MQ=255)
                     atcatcACCTGACCACGCTGGTGAACCAGGTCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCATCGGCCAGATGACCGAGTACCTGAACAGCGATGACGACCTGCCGc                                                                                                                        <  1:1106332/150‑1 (MQ=255)
                      tcatcaCCTGACCACGCTGGTGAACCAGGTCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGca                                                                                                                       <  1:377977/150‑1 (MQ=255)
                         tcaCCTGACCACGCTGGTGAACCAGGTCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATCCATAAGTTGCGCGGAGGTGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCacac                                                                                                                    >  2:870142/1‑150 (MQ=14)
                                aCCACGCTGGTGAACCAGGTCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCatcatc                                                                                                             <  1:218399/150‑1 (MQ=255)
                                 ttcgacctgggccagggtgttccaccacaggtacttggacttgtaggtcgcatcgatgatggtgtgcggcaggccgtcatcgctgttcaggtactcggccagatgaccgagTAc                                                                                                                                                 <  1:865137‑M2/3‑1 (MQ=255)
                                 ttcgacctgggccagggtgttccaccacaggtacttggacttgtaggtcgcatcgatgatggtgtgcggcaggccgtcatcgctgttcaggtactcggccagatgaccgagTAc                                                                                                                                                 >  2:865137‑M2/112‑114 (MQ=255)
                                           gAACCAGGTCAGCTACCCGGATGGTAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTa                                                                                                  >  1:327287/1‑150 (MQ=255)
                                                 ggTCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTc                                                                                            >  2:536310/1‑150 (MQ=38)
                                                   tCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGcaca                                                                                                                     >  2:508015/1‑123 (MQ=40)
                                                   tCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGcaca                                                                                                                     <  1:508015/123‑1 (MQ=40)
                                                   tCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCa                                                                                          >  1:1104380/1‑150 (MQ=39)
                                                    cAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCaa                                                                                         <  2:52718/150‑1 (MQ=38)
                                                           ccGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCtg                                                                                  >  1:63735/1‑150 (MQ=39)
                                                                         cTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGc                                                                                                        <  2:148521/114‑1 (MQ=39)
                                                                         cTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGc                                                                                                        >  1:148521/1‑114 (MQ=39)
                                                                          tGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTg                                                                   >  1:317667/1‑150 (MQ=35)
                                                                           ggCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTgg                                                                  <  1:1093624/150‑1 (MQ=34)
                                                                            taggtcgcatcgatgatggtgtgcggcaggccgtcatcgctgttcaggtactcggccagatgaccgagTACCTGAACAGCGa                                                                                                                                      >  2:902940‑M2/69‑82 (MQ=255)
                                                                            taggtcgcatcgatgatggtgtgcggcaggccgtcatcgctgttcaggtactcggccagatgaccgagTACCTGAACAGCGa                                                                                                                                      <  1:902940‑M2/14‑1 (MQ=255)
                                                                               aGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCa                                                              <  2:63735/150‑1 (MQ=34)
                                                                                gcgcgcTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAg                                                             <  1:536310/150‑1 (MQ=34)
                                                                                   cgcTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTc                                                          >  2:462728/1‑150 (MQ=33)
                                                                                     tcgatgatggtgtgcggcaggccgtcatcgctgttcaggtactcggccagatgaccgagTAc                                                                                                                                                 >  2:704525‑M2/60‑62 (MQ=255)
                                                                                     tcgatgatggtgtgcggcaggccgtcatcgctgttcaggtactcggccagatgaccgagTAc                                                                                                                                                 <  1:704525‑M2/3‑1 (MQ=255)
                                                                                         gacgacAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGc                                                    >  1:515150/1‑150 (MQ=32)
                                                                                         gacgacAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGc                                                    >  2:72336/1‑150 (MQ=32)
                                                                                               aaGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGaa                                                       <  1:420222/141‑1 (MQ=11)
                                                                                               aaGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGaa                                                       >  2:420222/1‑141 (MQ=11)
                                                                                               aaGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAg                                              <  2:974416/150‑1 (MQ=35)
                                                                                                    cAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTg                                         <  2:1104380/150‑1 (MQ=35)
                                                                                                       ccTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTc                                      >  2:519524/1‑150 (MQ=35)
                                                                                                       ccTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTc                                      >  2:66891/1‑150 (MQ=35)
                                                                                                        cTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCg                                     >  1:721471/1‑150 (MQ=35)
                                                                                                            tCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGa                                            >  2:720795/1‑139 (MQ=35)
                                                                                                            tCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGa                                            <  1:720795/139‑1 (MQ=35)
                                                                                                              gCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAag                               >  1:438646/1‑150 (MQ=35)
                                                                                                              gCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAag                               <  1:470501/150‑1 (MQ=35)
                                                                                                              gCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAag                               >  1:807544/1‑150 (MQ=35)
                                                                                                               tcgctgttcaggtaCTCGGTCATCTGGCCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTa                                                                                                  >  2:902940‑M1/15‑82 (MQ=255)
                                                                                                               tcgctgttcaggtaCTCGGTCATCTGGCCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTa                                                                                                  <  1:902940‑M1/68‑1 (MQ=255)
                                                                                                                      cGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGta                       <  1:66891/150‑1 (MQ=39)
                                                                                                                          gtaCTCGGTCATCTGGCCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGa                                                                                                           <  1:704525‑M1/59‑1 (MQ=255)
                                                                                                                          gtaCTCGGTCATCTGGCCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGa                                                                                                           >  2:704525‑M1/4‑62 (MQ=255)
                                                                                                                          gtaCTCGGTCATCTGGCCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGaa                                                       <  1:865137‑M1/111‑1 (MQ=255)
                                                                                                                          gtaCTCGGTCATCTGGCCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGaa                                                       >  2:865137‑M1/4‑114 (MQ=255)
                                                                                                                              ctcggtcatctggccgagTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGc                >  2:409339‑M2/19‑150 (MQ=255)
                                                                                                                                CGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTa              <  1:661719‑M1/150‑1 (MQ=255)
                                                                                                                                   ccAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGa           >  1:553078/1‑150 (MQ=39)
                                                                                                                                    cAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACGAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGAc          >  1:27927/1‑150 (MQ=38)
                                                                                                                                    cAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGAc          <  2:327287/150‑1 (MQ=39)
                                                                                                                                    cAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTCGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGAc          >  2:152993/1‑150 (MQ=38)
                                                                                                                                      gATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGGACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGACGa        >  2:244646/1‑150 (MQ=38)
                                                                                                                                       aTGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGACGAg       <  2:661719/150‑1 (MQ=40)
                                                                                                                                            cgagTATCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGACGAGCGCCa  >  2:910300‑M2/5‑150 (MQ=255)
                                                                                                                                                |                                                                                                                                                 
GCCGCAAGACCACCTACGAATATCATCACCTGACCACGCTGGTGAACCAGGTCAGCTACCCGGATGGCAGCACCTGGCGAGCGCGCTACGACGACAAGGGCAACCTGCTCGCCGAATTCGATGCCCTCGGCCAGATGACCGAGTACCTGAACAGCGATGACGGCCTGCCGCACACCATCATCGATGCGACCTACAAGTCCAAGTACCTGTGGTGGAACACCCTGGCCCAGGTCGAACGCTATCAGGACTGCTCGGGCAAGAGCACGTACTACCGCTATGACGAGCGCCA  >  NC_002947/3516514‑3516802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.