New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5254003	48 (1.110)	3 (0.070)	3/242	NT	6.0%	coding (679/912 nt)	PP_4630	MerR family transcriptional regulator
	?	NC_002947	= 5254030	48 (1.160)					coding (652/912 nt)	PP_4630	MerR family transcriptional regulator

GCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACGGTGCGGCTACACGGCACACGGGCCAGCTGCAAG  >  NC_002947/5253882‑5254175                                                                                                                                                     |                                                                                                                                                  gctgctTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGc                                                                                                                                                  <  2:466450‑M2/150‑2 (MQ=255)    gctTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGcggc                                                                                                                                               <  2:303072‑M2/150‑5 (MQ=255)         aCCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCTGCCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGccc                                                                                                                                          <  1:256807/150‑1 (MQ=255)                 ggaacaacGGGCATTCCAGCACCGACCCCTGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCCGGGCGTAAGGACCAACCCCCGCAAAGACCTGTGCTAGCTCCTGCAGCGGCTGCCCGTTCGTCa                                                                                                                                  <  1:193251/148‑1 (MQ=255)                         gggCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATc                                                                                                                          >  2:230798/1‑150 (MQ=255)                            cATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCAcg                                                                                                                       >  2:153989/1‑150 (MQ=255)                                 cAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCgtgt                                                                                                                  >  1:303512/1‑150 (MQ=255)                                  aGCATCGACGCCAGGCGCTTGAAGTGCGTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGtt                                                                                                                 >  1:309965/1‑150 (MQ=255)                                  aGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGtt                                                                                                                 <  2:913206/150‑1 (MQ=255)                                  aGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCAACAGTTTGTCTGGCTTCAGCCGTTCGCAGACCAGCTCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGtt                                                                                                                 >  1:520683/1‑150 (MQ=255)                                    cATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTtc                                                                                                               >  2:829103/1‑150 (MQ=255)                                      aactcGCCAGGCACTTCAAGCGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTc                                                                                                                                      <  1:277395/121‑1 (MQ=255)                                      aactcGCCAGGCACTTCAAGCGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTc                                                                                                                                      >  2:277395/5‑125 (MQ=255)                                       ttaCGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCTGGATCACGCGTGTTtcgtc                                                                                                            <  2:389116/148‑1 (MQ=255)                                       cGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTtcgtc                                                                                                            <  1:893821/150‑1 (MQ=255)                                        ctcGCCAGGCACTTCAAGCGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTtcgtcg                                                                                                           >  2:219207/3‑150 (MQ=255)                                             cAGGCACTTCAAGCGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGcc                                                                                                      >  2:845384/1‑150 (MQ=255)                                                gcgcTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAg                                                                                                   >  1:374334/1‑150 (MQ=255)                                                  gcTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGa                                                                                                 >  1:331149/1‑150 (MQ=255)                                                       aaGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAgg                                                                                            >  2:836270/1‑150 (MQ=255)                                                          cgCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTg                                                                                         <  1:845384/149‑1 (MQ=255)                                                              tGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTa                                                                                     <  1:219207/150‑1 (MQ=255)                                                                gCGAGTTCTGCTCCAAGCGACTGATGGGACAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTAcc                                                                                   <  1:227554/150‑1 (MQ=255)                                                                  gAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGTGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAg                                                                                 <  1:354069/150‑1 (MQ=255)                                                                        tgctgTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTc                                                                           >  1:132293/1‑150 (MQ=255)                                                                             tgGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCt                                                                      >  2:644358/1‑150 (MQ=255)                                                                               ggCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCa                                                                    <  2:69489/150‑1 (MQ=255)                                                                                gCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCAt                                                                   <  1:230798/150‑1 (MQ=255)                                                                                gCGACTGATGGGAAAACAGCACCAGGGCGTACGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCCACGCAAGCTCAt                                                                   >  1:445688/1‑150 (MQ=255)                                                                                 cGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATg                                                                  <  1:836270/150‑1 (MQ=255)                                                                                  gACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATgg                                                                 <  2:1116538/150‑1 (MQ=255)                                                                                       aTGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTg                                                            >  1:667809/1‑150 (MQ=255)                                                                                        tGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTtcgtc                                                                                                            >  1:420306/1‑101 (MQ=255)                                                                                        tGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTtcgtc                                                                                                            <  2:420306/101‑1 (MQ=255)                                                                                          ggAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGccc                                                         >  2:723694/1‑150 (MQ=255)                                                                                          ggAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGccc                                                         <  2:574382/150‑1 (MQ=255)                                                                                           gAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGcccc                                                        <  2:264556/150‑1 (MQ=255)                                                                                              aaCAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGc                                                     >  1:35043/1‑150 (MQ=255)                                                                                                      cAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCTGTATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCACTGgcgc                                             >  1:126926/1‑150 (MQ=255)                                                                                                      cAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGgcgc                                             <  1:829103/150‑1 (MQ=255)                                                                                                         ggCGTCCGGCTTCAGGCATTCGCCGACCCGCGCAAGCTCCTTCAGCGGCTGCCCGTTCGCCCGCGGTTTTGCTCTTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCaa                                          <  1:466450/150‑1 (MQ=255)                                                                                                               cGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCAc                                    >  1:425015/1‑150 (MQ=255)                                                                                                                ggCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACg                                   <  2:667809/150‑1 (MQ=255)                                                                                                                 gCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGcggctgaagccggacgccctggtgctgttttcccatcagtcgcccacagcagaactcgccaggcacttcaagcgcctggcgtcgatgctggaatgcccgttgttactggctgg                                  <  2:706101‑M2/150‑114 (MQ=255)                                                                                                                     cAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGcggctgaagccggacgccctggtgctgttttcccatcagtcgcccacagcagaactcgccaggcacttcaagcgcctggcgtcgatgctggaatgcccgttgttactggctggtgaa                              >  1:706101‑M2/1‑33 (MQ=255)                                                                                                                      aGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACGGTGCgg                             <  1:551815/150‑1 (MQ=255)                                                                                                                       gCCGTTCGCAGACCAGCGCAAGCTCCTGCAGcggctgaagccggacgccctggtgctgttttcccatcagtcgcccacagcagaactcgccaggcacttcaagcgcctggattcgatgctggaatgcccgttgttactggctggtgaagc                            <  1:900650‑M2/150‑120 (MQ=255)                                                                                                                                aGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACGGTGCGGCTACACGGca                   <  1:153989/150‑1 (MQ=255)                                                                                                                                 gACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACGGTGCGGCTACACGGcac                  <  2:35043/150‑1 (MQ=255)                                                                                                                                  aCCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACGGTGCGGCTCCACGGcaca                 >  2:94799/1‑150 (MQ=255)                                                                                                                                    cAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGCGATCACGCGTGTTTCGTCGCTGCCCAGGAACAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAGTGGCGCCCATAGCACTATACGGCTACACGGCACACg               >  2:53282/1‑150 (MQ=255)                                                                                                                                     aGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACGGTGCGGCTACACGGCACACgg              <  2:769130/150‑1 (MQ=255)                                                                                                                                         cAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGACCGAACGATCACGGTGCGGCTACACGGCACACGGGCCa          >  2:88508/1‑150 (MQ=255)                                                                                                                                             cTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACGGTGCGGCTACACGGCACACGGGCCAGCTg      <  2:374334/150‑1 (MQ=255)                                                                                                                                                 tGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACGGTGCGGCTACACGGCACACGGGCCAGCTGCCAg  >  2:460810/1‑150 (MQ=255)                                                                                                                                                 tGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACGGTGCGGCTACACGGCACACGGGCCAGCTGCAAg  >  2:76055/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                  GCTGCTTCACCAGCCAGTAACAACGGGCATTCCAGCATCGACGCCAGGCGCTTGAAGTGCCTGGCGAGTTCTGCTGTGGGCGACTGATGGGAAAACAGCACCAGGGCGTCCGGCTTCAGCCGTTCGCAGACCAGCGCAAGCTCCTGCAGCGGCTGCCCGTTCGCCAGCGGGATCACGCGTGTTTCGTCGCTGCCCAGGATCAGGCTGGTTACCAGCAACTCAAGCTCATGGCACTGCCCCGGCAATGGCGCCAATAGCACGGTGCGGCTACACGGCACACGGGCCAGCTGCAAG  >  NC_002947/5253882‑5254175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.