New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5350530	29 (0.670)	7 (0.170)	6/242	NT	17.8%	intergenic (+19/+63)	PP_4704/PP_4705	hypothetical protein/glyoxalase
	?	NC_002947	= 5350559	37 (0.900)					intergenic (+48/+34)	PP_4704/PP_4705	hypothetical protein/glyoxalase

CAAGCTGGAAGACGACCGGGTGTACTTCATCGATACCAGCCTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTGCGCCGTCACCATGGTTGAACGGCCGGTCGA  >  NC_002947/5350412‑5350708                                                                                                                                                     |                                                                                                                                                      cAAGTTGGAAGACGACCGGGTGTACTTCATCGATACCAGCCTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAgc                                                                                                                                                     >  2:409672‑M2/1‑148 (MQ=255)   aGCTGGAAGACGACCGGGTGTACTTCATCGATACCAGCCTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAgcgg                                                                                                                                                   >  1:728645‑M2/1‑146 (MQ=255)         aaGACGACCGGGTGTACTTCATCGATACCAGCCTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGc                                                                                                                                             <  1:363558/150‑1 (MQ=255)                    gtgtACTTCATCGATACCAGCCTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGAAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTCCCTGTGGGAGCGGGCGTGCCCGCGAAGAgg                                                                                                                                  >  1:134773/1‑150 (MQ=255)                          ttCATCGATACCAGCCTAGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTCGCAGGCCCACCCCCACAAGCC‑TGCGCACTACCTGTTGGAGCCGGCGTGCCCGCGAAGAGGCCAGCa                                                                                                                            >  2:56610/1‑150 (MQ=255)                               cGATACCAGCCTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCGCCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGAG‑GGTGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGc                                                                                                                       <  1:202865/150‑1 (MQ=39)                                gATACCAGCCTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCTCCCACAGGTAGTGCGCAGG‑CCTGTGGGGgcgggcctgccagaggggattactcg                                                                                                                             >  2:928907‑M2/1‑117 (MQ=255)                                gATACCAGCCTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCTCCCACAGGTAGTGCGCAGG‑CCTGTGGGGgcgggcctgccagaggggattactcg                                                                                                                             <  1:928907‑M2/143‑27 (MQ=255)                                      aGCCTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAaac                                                                                                                <  1:873472/150‑1 (MQ=255)                                        ccTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGAAGCGGGCGTGCGCGCGAAGAGGCCAGCACGGGCTGCAaacca                                                                                                              >  2:850224/1‑150 (MQ=255)                                            gggCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCg                                                                                                          >  1:547653/1‑150 (MQ=255)                                                   cTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGCAGAGGCCAGCACGGGCTTCAAACCAACCGCTGcccc                                                                                                   >  1:286280/1‑150 (MQ=255)                                                                ccGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGt                                                                                      <  2:86674/150‑1 (MQ=255)                                                                        tgACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGc                                                                              >  2:839953/1‑150 (MQ=255)                                                                                aTGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAAc                                                                      <  2:990425/150‑1 (MQ=255)                                                                                   cACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCtt                                                                   <  2:322790/150‑1 (MQ=255)                                                                                   cACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCtt                                                                   <  1:839953/150‑1 (MQ=255)                                                                                      cTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCAATCCCTGTGGGAGCGGGCGTGGCCGTGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGtt                                                                >  1:690085/1‑150 (MQ=255)                                                                                                     tCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCcag                                                 >  1:670022/1‑150 (MQ=255)                                                                                                     tCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCcag                                                 <  2:558408/150‑1 (MQ=255)                                                                                                       cccTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAagag                                                                                                                                   >  1:137331/1‑66 (MQ=255)                                                                                                       cccTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAagag                                                                                                                                   <  2:137331/66‑1 (MQ=255)                                                                                                        ccTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAAc                                                                      <  2:1020503/126‑1 (MQ=255)                                                                                                        ccTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAAc                                                                      >  1:1020503/1‑126 (MQ=255)                                                                                                        ccTCTGGCAGGCCCACCCCCACCGACC‑TGCGCACTACCTGTTGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCcagcag                                              >  2:680984/1‑150 (MQ=255)                                                                                                          tctGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGt                                            <  2:547653/150‑1 (MQ=255)                                                                                                              gCAGGCCCGCCCCCACAGGCC‑CGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGaa                                        <  2:690085/150‑1 (MQ=255)                                                                                                                    ccgcccCCACAGGCC‑TGCGCACTACCTGTGGGAgcgggcgtgccagaggggattactcggcatccaggtgcatcggtgtcaccacccggccatcgctttgaggctgccccaggctggtatcgatg                                                           >  2:610649‑M2/1‑33 (MQ=255)                                                                                                                    ccgcccCCACAGGCC‑TGCGCACTACCTGTGGGAgcgggcgtgccagaggggattactcggcatccaggtgcatcggtgtcaccacccggccatcgctttgaggctgccccaggctggtatcgatg                                                           <  1:610649‑M2/125‑93 (MQ=255)                                                                                                                    ccgcccCCACAGGCC‑TGCGCACTACCTGTGGGAgcgggcctgccagaggggattactcggcatccaggtgcatcggtgtcaccacccggccatcgctttgaggctgccccaggctggtatcgatgaagtacacccggtcgtcttccagct                                  <  2:112852‑M2/150‑118 (MQ=255)                                                                                                                    ccgcccCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGt                                            <  1:708929/140‑1 (MQ=255)                                                                                                                    ccgcccCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGt                                            >  2:708929/1‑140 (MQ=255)                                                                                                                      gcccCCACAGGCC‑TGCGCACTACCTGTGGGAgcgggcctgccagaggggattactcggcatccaggtgcatcggtgtcaccacccggccatcgctttgaggctgc                                                                             >  2:208915‑M2/1‑31 (MQ=255)                                                                                                                      gcccCCACAGGCC‑TGCGCACTACCTGTGGGAgcgggcctgccagaggggattactcggcatccaggtgcatcggtgtcaccacccggccatcgctttgaggctgc                                                                             <  1:208915‑M2/105‑75 (MQ=255)                                                                                                                         cccACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTgcgc                             >  2:641938/1‑150 (MQ=255)                                                                                                                           cacaGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAAc                                                                      >  1:835672/1‑107 (MQ=255)                                                                                                                           cacaGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAAc                                                                      <  2:835672/107‑1 (MQ=255)                                                                                                                            acaGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTGCGCCGt                          >  1:221059/1‑150 (MQ=255)                                                                                                                              aGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCccggc                                                          >  2:949497/1‑116 (MQ=255)                                                                                                                              aGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCccggc                                                          <  1:949497/116‑1 (MQ=255)                                                                                                                                        cACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTGCGCCGTCACCATGGTTg               >  1:39147/1‑150 (MQ=255)                                                                                                                                          cTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTGCGCCGTCACCATGGTTGaa             <  1:592057/150‑1 (MQ=255)                                                                                                                                              cTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACGCCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAg                                       >  1:131635/1‑120 (MQ=255)                                                                                                                                              cTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACGCCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAg                                       <  2:131635/120‑1 (MQ=255)                                                                                                                                              cTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTGCGCCGTCACCATGGTTGAACGGc         <  2:39147/150‑1 (MQ=255)                                                                                                                                               tgtgGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTgcgc                             <  2:806366/129‑1 (MQ=255)                                                                                                                                               tgtgGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTgcgc                             >  1:806366/1‑129 (MQ=255)                                                                                                                                                 tgGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTGCGCCGTCACCATGGTTGAACGGCCgg      >  1:347943/1‑150 (MQ=255)                                                                                                                                                     aGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTGCGCCGTCACCATGGTTGAACGGCCGGTCGa  <  2:670022/150‑1 (MQ=255)                                                                                                                                                     aGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCGTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTGCGCCGTCACCATGGTTGAACGGCCGGTCGa  <  2:134773/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CAAGCTGGAAGACGACCGGGTGTACTTCATCGATACCAGCCTGGGGCAGCCTCAAAGCGATGGCCGGGTGGTGACACCGATGCACCTGGATGCCGAGTAATCCCCTCTGGCAGGCCCGCCCCCACAGGCC‑TGCGCACTACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCAGCACGGGCTTCAAACCAACCGCTGCCCCGACACCGCCGGGTGATACAGCGGTTGAACCTTGTTCCCGGCCGGGTCCAGCAGGTGGAAGCTGCGTGCGCCGTCACCATGGTTGAACGGCCGGTCGA  >  NC_002947/5350412‑5350708

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.