New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5492350 =	37 (0.850)	3 (0.070)	3/236	NT	8.8%	intergenic (‑103/+16)	PP_5716/cobJ	hypothetical protein/precorrin‑3B C17‑methyltransferase
	?	NC_002947	5492394 =	28 (0.700)					coding (1670/1698 nt)	cobJ	precorrin‑3B C17‑methyltransferase

ATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACG  >  NC_002947/5492246‑5492542                                                                                                                                                     |                                                                                                                                                     aTGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAACCCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGt                                                                                                                                                     <  1:496987/150‑1 (MQ=255)   gggAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGtat                                                                                                                                                   >  2:950114/1‑150 (MQ=255)      aaaGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGa                                                                                                                                                >  1:168231/1‑150 (MQ=255)        aGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGAcc                                                                                                                                              >  2:446310/1‑150 (MQ=255)        aGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGAcc                                                                                                                                              <  1:818079/150‑1 (MQ=255)          ctgccagaaatggtcgacatgcgcaccatggtgctggttggatcgtccactacctgcactttcgaccgcgcagctggcggggtttgggtctatacCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCa                                                                                                                                            >  1:1022911‑M1/96‑150 (MQ=255)               agaaatggtcgacatgcgcaccatggtgctggttggatcgtccactacctgcactttcgaccgcgcagctggcggggtttgggtctatacCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGtat                                                                                                                                                   <  2:858659‑M1/48‑1 (MQ=255)               agaaatggtcgacatgcgcaccatggtgctggttggatcgtccactacctgcactttcgaccgcgcagctggcggggtttgggtctatacCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGtat                                                                                                                                                   >  1:858659‑M1/91‑138 (MQ=255)                  gAANGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGc                                                                                                                                    >  2:703830/1‑150 (MQ=255)                           ggTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCAGCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCAATACCAGCGCGGGGTATAGACCCAAGCCCCGCCAGCTgcgc                                                                                                                           <  2:1079339/150‑1 (MQ=255)                                  gCCAAATAGCTCCAGCCGAAAACTTACCTGTGACCTTTTCTTGAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCTGCCAGCTGCGCGGTCGaa                                                                                                                    >  1:25181/1‑150 (MQ=255)                                   ccAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGaaa                                                                                                                   <  2:462576/150‑1 (MQ=255)                                         aGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAg                                                                                                             <  2:507072/150‑1 (MQ=255)                                         aGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAg                                                                                                             <  1:298684/150‑1 (MQ=255)                                            tCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCCCCAGCTGCGCGGTCGAAAGTGCAGGTa                                                                                                          >  2:910610/1‑150 (MQ=255)                                                 ccGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGa                                                                                                     <  1:96228/150‑1 (MQ=255)                                                 ccGAAAACCCANATGTCACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCGACGGGGGCTTACGAGATCACGCCATACCAGCGCGGGGTATANCCNCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGa                                                                                                     <  1:357042/150‑1 (MQ=255)                                                     aaaCCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGAt                                                                                                 <  2:787277/150‑1 (MQ=255)                                                          tacctGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCTGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAAc                                                                                            <  2:25181/150‑1 (MQ=255)                                                              tgtgACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGc                                                                                        <  1:1103335/150‑1 (MQ=255)                                                                    ttttACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATg                                                                                  <  2:8005/149‑1 (MQ=255)                                                                          cTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCTGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTgcgc                                                                            >  1:421290/1‑150 (MQ=255)                                                                             aaTCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGTGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATg                                                                         >  1:615932/1‑150 (MQ=255)                                                                                 tGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGa                                                                     <  1:777714/150‑1 (MQ=255)                                                                                     aCGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATGCAACCAGCACCATGGTGCGCATGTCTACCAt                                                                 >  2:906654/1‑150 (MQ=255)                                                                                       gAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCAttt                                                               >  2:143340/1‑150 (MQ=255)                                                                                           cAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTgg                                                           <  2:867611/150‑1 (MQ=255)                                                                                           cAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTgg                                                           <  2:615932/150‑1 (MQ=255)                                                                                           cAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGACATACCAGCGCGAGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGGGCGCATGTCGACCATTTCTgg                                                           <  2:306845/150‑1 (MQ=255)                                                                                              tgggtctataccccgcgctggtatggcgcaaagccgtaagcggcggcagcgcgggGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGgcag                                                        >  1:1022911‑M2/56‑150 (MQ=255)                                                                                                     ataccccgcgctggtatggcgcaaagccgtaagcggcggcagcgcgggGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCt                                                             >  1:858659‑M2/49‑138 (MQ=255)                                                                                                     ataccccgcgctggtatggcgcaaagccgtaagcggcggcagcgcgggGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCt                                                             <  2:858659‑M2/90‑1 (MQ=255)                                                                                                           CGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGATATAGACCCAACCCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAg                                           >  1:446310‑M1/1‑150 (MQ=255)                                                                                                                  ccgccgCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTa                                    <  2:525804/150‑1 (MQ=255)                                                                                                                        cTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCa                              >  1:889425/1‑150 (MQ=255)                                                                                                                                     gcCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCgg                 >  2:635524/1‑150 (MQ=255)                                                                                                                                     gcCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCgg                 >  1:567817/1‑150 (MQ=255)                                                                                                                                       cacaCCAGCGCGGGGTATAGACCCAAACCCCGCCAGTTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGt                                         <  1:840923/121‑1 (MQ=255)                                                                                                                                       cATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGTTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGt                                         >  2:840923/1‑124 (MQ=255)                                                                                                                                           ccAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTAcc           >  1:977177/1‑150 (MQ=255)                                                                                                                                                 cgggGTATAGACCCAAACCCTGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACAATATTAATGAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTc     >  1:562050‑M2/5‑150 (MQ=255)                                                                                                                                                    gGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACg  >  2:559082‑M2/2‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ATGGGAAAGGTCTCCAGGAAGGGTACGGTTGGAGCCAAATAGCTCCAGCCGAAAACCTACCTGTGACCTTTACCTCAATCTGCCACGAAGCAGTTCCTCATCTGCCCGCGCTGCCGCCGCTTACGGCTTTGCGCCATACCAGCGCGGGGTATAGACCCAAACCCCGCCAGCTGCGCGGTCGAAAGTGCAGGTAGTGGACGATCCAACCAGCACCATGGTGCGCATGTCGACCATTTCTGGCAGCAGTTCGGCCAAGGTGACTACCTTCAGCGTCTGCCCCGGCCTACCGATGTCACG  >  NC_002947/5492246‑5492542

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.