| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1780109 = | 48 (0.970) | 13 (0.310) | 13/226 | 2.5 | 25.7% | intergenic (+26/+80) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| ? | NC_002947 | 1780171 = | 34 (0.800) | intergenic (+88/+18) | PP_1587/dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase | |||||
GCGCGTGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1780273‑1780109‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAG > NC_002947/1780171‑1780311 GCGCGTGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTAC < 1:1108870/150‑1 GTGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGT < 2:998362/150‑1 GCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGG < 1:621528/150‑1 CATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAG < 1:154319/138‑1 CATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAG > 2:154319/1‑138 GGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACTGCGCTGCGCTTGAAATCAGCGCTGTACCTGTGGGAGCGG < 1:518401/150‑1 CACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGC > 1:1167730/1‑150 CCCTTCGCGGGCACGCCCGCTCCCAGAGGTGCAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGGGCGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAG > 1:487799/1‑150 CCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGC > 1:348641/1‑150 CACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTG‑GGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAAT > 1:855984/1‑96 CACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTG‑GGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAAT < 2:855984/96‑1 CAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGC < 1:397090/91‑1 CAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGC > 2:397090/1‑91 GTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAG > 1:777165/1‑80 GTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTCCCCGCGAAGGGGTTGATCAGCGGTTTTGCAG < 2:777165/80‑1 ACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGCGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCC < 2:348641/150‑1 AGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGG > 1:998476/1‑150 AGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCA < 1:768/141‑1 AGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCA > 2:768/1‑141 CGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCA > 2:588438/1‑150 TACCTGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCACTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTC > 1:618073/1‑150 TGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGC < 2:255376/150‑1 TGTGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGC < 2:998476/150‑1 TGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGC > 1:8074/1‑107 TGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGC < 2:8074/107‑1 TGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCG < 2:1097803/60‑1 TGGGAGCGGGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCG > 1:1097803/1‑60 GGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCC < 1:40012/56‑1 GGCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCC > 2:40012/1‑56 GCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAG > 2:1144878/1‑144 GCGTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAG < 1:1144878/144‑1 GCGCGTGCGCATGGCACTGGTTGCACCGCTGGCCGAATGCATCGAAGCGGCGGAGCGCATTCGCGCCTTCCTGCAAAACCGCTGATCAACCCCTTCGCGGGCACGCCCGCTCCCACAGGTACAGCGCTGATTTCAAGCGCAGCGCAGTACCTGTGGGAGCGGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1780273‑1780109‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtacctgtgggagcgggcgTGCCCGCGAAGGGGTTGATCAGCGGTTTTGCAGGAAGGCGCGAATGCGCTCCGCCGCTTCGATGCATTCGGCCAGCGGTGCAACCAGTGCCATGCGCACGCGCCCGGCACCCGGGTTCACCCCATCCACTTCACGCGACAG > NC_002947/1780171‑1780311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |