| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 219916 = | 55 (1.120) | 3 (0.060) | 3/242 | NT | 5.1% | coding (25422/26049 nt) | PP_0168 | putative surface adhesion protein |
| ? | NC_002947 | 219947 = | 58 (1.220) | coding (25453/26049 nt) | PP_0168 | putative surface adhesion protein | |||||
GATGTCATTGCCGTCCTTGGCACCGGAGATATCGAACTCGGTGTAGTGCTCGGTGATGTACTGGTGAACATTGCTGGTAGTGACAGCACCGACTTCAACACCGCTCTTCTGTGCAACGTACGTCTGCAGGGCCTGGTAGCCCTCGCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/220066‑219916‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAA > NC_002947/219947‑220059 GATGTCATTGCCGTCCTTGGCACCGGAGATATCGAACTCGGTGTAGTGCTCGGTGCTGTACTGGTGAACATTGCTGGTAGTGACAGCACCGACTTCAACACCGCTCTTCTGTGCAACGTACGTCTGCAGGGCCTGGTAGCCCTCGCTGAC < 1:531652/150‑1GATGTCATTGCCGTCCTTGGCACCGGAGATATCGAACTCGGTGTAGTGCTCGGTGATGTACTGGTGAACATTGCTGGTAGTGACAGCACCGACTTCAACACCGCTCTTCTGTGCAACGTACGTCTGCAGGGCCTGGTAGCCCTCGCTGAC > 2:768148/1‑150 AACGTACGTCTGCAGGGCCTGGTAGCCCTCGCTGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAA > 2:1044065/1‑150 GTACGTCTGCAGGGCCTGGTAGCCCTCGCTGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGA > 1:811126/1‑117 GTACGTCTGCAGGGCCTGGTAGCCCTCGCTGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGA < 2:811126/117‑1 GTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCAC > 1:59190/1‑58 GTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCAC < 2:59190/58‑1 GATGTCATTGCCGTCCTTGGCACCGGAGATATCGAACTCGGTGTAGTGCTCGGTGATGTACTGGTGAACATTGCTGGTAGTGACAGCACCGACTTCAACACCGCTCTTCTGTGCAACGTACGTCTGCAGGGCCTGGTAGCCCTCGCTGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/220066‑219916‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAA > NC_002947/219947‑220059 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |